Variant report

Variant	rs13066560
Chromosome Location	chr3:159532411-159532412
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159531580..159534409-chr3:159536227..159539065,5	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12629172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12631468	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13064339	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13065938	1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13065987	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13066040	0.89[MEX][hapmap]
rs13067050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13072356	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13075534	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13077427	0.85[CEU][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs13078322	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13080307	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13080768	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13085339	0.91[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13088481	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13088959	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13100094	0.85[CEU][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs13100614	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16830741	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16830748	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16830780	0.85[CEU][hapmap]
rs2076889	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.83[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2126142	0.85[CEU][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs2366405	0.85[CEU][hapmap]
rs34682429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35035161	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35165740	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35527279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35792854	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3892994	0.91[CEU][hapmap];0.82[YRI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56077320	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58755984	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61597037	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6441272	0.90[CHB][hapmap]
rs6792870	0.85[CEU][hapmap];0.89[MEX][hapmap]
rs71625413	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7631400	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs9860588	0.85[CEU][hapmap]
rs9880487	0.85[CEU][hapmap];0.89[MEX][hapmap]
rs9884085	0.85[CEU][hapmap];0.89[MEX][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13066560	PUS3	trans	parietal	SCAN

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159523000-159536200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:159523400-159533000	Weak transcription	Osteobl	bone
3	chr3:159523400-159537800	Weak transcription	NH-A	brain
4	chr3:159523400-159541200	Weak transcription	Fetal Kidney	kidney
5	chr3:159523400-159541400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:159524600-159535800	Weak transcription	Aorta	Aorta
7	chr3:159524600-159538600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:159525600-159540600	Weak transcription	NHLF	lung
9	chr3:159525800-159536400	Weak transcription	NHDF-Ad	bronchial
10	chr3:159525800-159539400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:159526400-159535600	Weak transcription	Colon Smooth Muscle	Colon
12	chr3:159526400-159541400	Weak transcription	Rectal Smooth Muscle	rectum
13	chr3:159526600-159534400	Weak transcription	Adipose Nuclei	Adipose
14	chr3:159530200-159532800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:159530600-159533200	Enhancers	Brain Cingulate Gyrus	brain
16	chr3:159530800-159533400	Enhancers	HMEC	breast
17	chr3:159531000-159532600	Enhancers	Brain Angular Gyrus	brain
18	chr3:159531200-159532800	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr3:159531400-159538000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr3:159531600-159532600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr3:159531600-159532600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr3:159531600-159532600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr3:159531600-159532600	Enhancers	Brain Substantia Nigra	brain
24	chr3:159531600-159532600	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr3:159531600-159532800	Enhancers	Brain Hippocampus Middle	brain
26	chr3:159531600-159533000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr3:159531600-159533000	Enhancers	Placenta Amnion	Placenta Amnion
28	chr3:159531600-159534600	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr3:159531800-159532600	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr3:159531800-159532600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr3:159531800-159532600	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr3:159531800-159532600	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr3:159531800-159532600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr3:159531800-159532600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr3:159531800-159532600	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr3:159531800-159532600	Enhancers	Colonic Mucosa	Colon
37	chr3:159531800-159532600	Enhancers	Placenta	Placenta
38	chr3:159531800-159532600	Enhancers	Fetal Thymus	thymus
39	chr3:159531800-159532600	Enhancers	Right Ventricle	heart
40	chr3:159531800-159532600	Enhancers	Hela-S3	cervix
41	chr3:159531800-159532800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr3:159531800-159532800	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr3:159531800-159532800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr3:159531800-159532800	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr3:159532000-159532600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr3:159532000-159536200	Weak transcription	Fetal Muscle Trunk	muscle
47	chr3:159532000-159537600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr3:159532200-159532800	Enhancers	HUES64 Cell Line	embryonic stem cell
49	chr3:159532200-159533400	Strong transcription	Stomach Smooth Muscle	stomach
50	chr3:159532200-159535000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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