Variant report

Variant	rs2366405
Chromosome Location	chr3:159580653-159580654
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs13064339	0.85[CEU][hapmap]
rs13065938	0.85[CEU][hapmap]
rs13066040	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13066560	0.85[CEU][hapmap]
rs13067050	0.84[CEU][hapmap]
rs13075534	0.85[CEU][hapmap]
rs13077427	0.92[CEU][hapmap]
rs13078322	0.85[CEU][hapmap]
rs13100094	0.92[CEU][hapmap]
rs13100614	0.85[CEU][hapmap]
rs16830748	0.85[CEU][hapmap]
rs16830780	0.86[CEU][hapmap]
rs2126142	0.92[CEU][hapmap]
rs6792870	0.92[CEU][hapmap]
rs7631400	0.92[CEU][hapmap]
rs9860588	0.92[CEU][hapmap]
rs9880487	0.92[CEU][hapmap]
rs9884085	0.92[CEU][hapmap]

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159572000-159582800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:159572400-159589400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:159573400-159582600	Enhancers	Fetal Brain Male	brain
4	chr3:159574000-159582800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:159574200-159582800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:159574800-159584800	Enhancers	Brain Angular Gyrus	brain
7	chr3:159574800-159586200	Weak transcription	Ovary	ovary
8	chr3:159575000-159580800	Enhancers	Rectal Smooth Muscle	rectum
9	chr3:159576200-159581800	Weak transcription	A549	lung
10	chr3:159576800-159584200	Enhancers	Fetal Heart	heart
11	chr3:159577000-159581000	Enhancers	Right Ventricle	heart
12	chr3:159577200-159580800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:159577800-159584800	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr3:159578000-159581000	Enhancers	Brain Substantia Nigra	brain
15	chr3:159578000-159581800	Weak transcription	Fetal Kidney	kidney
16	chr3:159578000-159583000	Enhancers	Brain Hippocampus Middle	brain
17	chr3:159578200-159585600	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr3:159578600-159585200	Weak transcription	Fetal Intestine Large	intestine
19	chr3:159578800-159581800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:159579200-159582600	Weak transcription	Fetal Stomach	stomach
21	chr3:159579200-159584200	Weak transcription	Fetal Muscle Trunk	muscle
22	chr3:159579400-159581400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr3:159579400-159582800	Weak transcription	Lung	lung
24	chr3:159579400-159583000	Weak transcription	Adipose Nuclei	Adipose
25	chr3:159579400-159583200	Weak transcription	Brain Germinal Matrix	brain
26	chr3:159579400-159584200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:159579400-159587400	Weak transcription	Fetal Intestine Small	intestine
28	chr3:159579400-159589600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr3:159579400-159589600	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr3:159579600-159581600	Weak transcription	NHDF-Ad	bronchial
31	chr3:159579600-159582400	Weak transcription	Aorta	Aorta
32	chr3:159579600-159582600	Weak transcription	Osteobl	bone
33	chr3:159579600-159583200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr3:159579600-159584800	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr3:159579600-159589200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr3:159579600-159589600	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr3:159579600-159589600	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr3:159579600-159599200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr3:159579600-159600600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr3:159579800-159580800	Weak transcription	Left Ventricle	heart
41	chr3:159579800-159581800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr3:159579800-159581800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr3:159579800-159582600	Weak transcription	Right Atrium	heart
44	chr3:159579800-159582600	Weak transcription	NH-A	brain
45	chr3:159579800-159582800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr3:159579800-159583200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr3:159579800-159585200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr3:159579800-159588600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr3:159580000-159582400	Weak transcription	HSMM	muscle
50	chr3:159580000-159582400	Weak transcription	HSMMtube	muscle

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