Variant report

Variant	rs9884085
Chromosome Location	chr3:159513437-159513438
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159506660..159510516-chr3:159511737..159514255,3	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11920991	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13064339	0.85[CEU][hapmap];0.89[MEX][hapmap]
rs13065938	0.85[CEU][hapmap];0.89[MEX][hapmap]
rs13066040	0.93[CEU][hapmap]
rs13066560	0.85[CEU][hapmap];0.89[MEX][hapmap]
rs13067050	0.83[CEU][hapmap]
rs13075534	0.85[CEU][hapmap];0.89[MEX][hapmap]
rs13077427	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.88[TSI][hapmap];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13078322	0.85[CEU][hapmap];0.89[MEX][hapmap]
rs13100094	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.88[TSI][hapmap];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13100614	0.85[CEU][hapmap];0.89[MEX][hapmap]
rs1553080	0.91[EUR][1000 genomes]
rs16830748	0.85[CEU][hapmap];0.89[MEX][hapmap]
rs16830780	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2076889	0.85[CEU][hapmap]
rs2126142	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.88[TSI][hapmap];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2366405	0.92[CEU][hapmap]
rs62270390	0.86[EUR][1000 genomes]
rs6792870	0.87[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7631400	1.00[CEU][hapmap];0.89[CHB][hapmap];0.93[GIH][hapmap];0.89[MEX][hapmap];0.88[TSI][hapmap];0.90[EUR][1000 genomes]
rs9860588	0.87[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9880487	0.87[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159493600-159516200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:159502000-159522800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr3:159504000-159518600	Enhancers	Brain Hippocampus Middle	brain
4	chr3:159504200-159518400	Enhancers	Brain Substantia Nigra	brain
5	chr3:159505000-159515000	Enhancers	Brain Angular Gyrus	brain
6	chr3:159505600-159515600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:159506000-159518200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr3:159506200-159522600	Weak transcription	Fetal Kidney	kidney
9	chr3:159506400-159513800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:159506400-159522400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr3:159506600-159514200	Weak transcription	Fetal Heart	heart
12	chr3:159507000-159513600	Weak transcription	NH-A	brain
13	chr3:159508000-159513800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:159508000-159513800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr3:159508000-159514000	Weak transcription	HMEC	breast
16	chr3:159508600-159520600	Enhancers	Brain Cingulate Gyrus	brain
17	chr3:159509000-159516600	Weak transcription	Liver	Liver
18	chr3:159509200-159515000	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr3:159509200-159516600	Weak transcription	HepG2	liver
20	chr3:159509400-159513600	Weak transcription	Lung	lung
21	chr3:159509400-159513800	Enhancers	Colon Smooth Muscle	Colon
22	chr3:159509400-159514000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr3:159509400-159515600	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr3:159509400-159517200	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr3:159509600-159513800	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr3:159509600-159514000	Weak transcription	NHEK	skin
27	chr3:159510200-159513800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr3:159510200-159513800	Weak transcription	HSMM	muscle
29	chr3:159510200-159516200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr3:159510800-159513600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr3:159511000-159514400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr3:159511800-159514000	Weak transcription	A549	lung
33	chr3:159512200-159514400	Enhancers	Aorta	Aorta
34	chr3:159512200-159515800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr3:159512200-159516200	Enhancers	Brain Anterior Caudate	brain
36	chr3:159512400-159514000	Weak transcription	HUVEC	blood vessel
37	chr3:159512400-159514400	Enhancers	Left Ventricle	heart
38	chr3:159512400-159514400	Enhancers	Right Atrium	heart
39	chr3:159512400-159517600	Enhancers	Adipose Nuclei	Adipose
40	chr3:159512600-159514400	Flanking Active TSS	Stomach Smooth Muscle	stomach
41	chr3:159512600-159520800	Enhancers	Brain Inferior Temporal Lobe	brain
42	chr3:159512800-159513800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr3:159512800-159515200	Enhancers	NHDF-Ad	bronchial
44	chr3:159513000-159514400	Enhancers	Right Ventricle	heart
45	chr3:159513000-159515000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr3:159513000-159515800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr3:159513000-159516000	Enhancers	Osteobl	bone
48	chr3:159513000-159516800	Weak transcription	Fetal Stomach	stomach
49	chr3:159513200-159513600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr3:159513200-159514000	Weak transcription	Fetal Muscle Leg	muscle

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