Variant report

Variant	rs13064339
Chromosome Location	chr3:159557953-159557954
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12629172	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12631468	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13065938	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13065987	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13066040	0.89[MEX][hapmap]
rs13066560	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13067050	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13072356	0.82[AMR][1000 genomes]
rs13075534	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13077427	0.85[CEU][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs13078322	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13080307	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13080768	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13085339	0.91[CEU][hapmap];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13088481	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13088959	0.91[CEU][hapmap];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13100094	0.85[CEU][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs13100614	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16830741	0.97[AMR][1000 genomes]
rs16830748	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16830780	0.85[CEU][hapmap]
rs2076889	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2126142	0.85[CEU][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs2366405	0.85[CEU][hapmap]
rs34682429	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35035161	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35165740	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35527279	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35792854	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3892994	0.91[CEU][hapmap];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56077320	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58755984	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61597037	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6792870	0.85[CEU][hapmap];0.89[MEX][hapmap]
rs71625413	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7631400	0.85[CEU][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs9860588	0.85[CEU][hapmap]
rs9880487	0.85[CEU][hapmap];0.89[MEX][hapmap]
rs9884085	0.85[CEU][hapmap];0.89[MEX][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13064339	PUS3	trans	parietal	SCAN

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159551400-159561800	Weak transcription	Aorta	Aorta
2	chr3:159555000-159558000	Weak transcription	A549	lung
3	chr3:159555200-159561600	Weak transcription	NHLF	lung
4	chr3:159555600-159561800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr3:159556000-159558400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:159556000-159558600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:159556000-159558600	Weak transcription	Hela-S3	cervix
8	chr3:159556000-159561800	Weak transcription	NHDF-Ad	bronchial
9	chr3:159556000-159566200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:159556200-159563400	Weak transcription	NHEK	skin
11	chr3:159557000-159559200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr3:159557000-159559800	Active TSS	Brain Anterior Caudate	brain
13	chr3:159557000-159560000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr3:159557200-159559000	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr3:159557200-159559400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:159557200-159559800	Active TSS	Cortex derived primary cultured neurospheres	brain
17	chr3:159557200-159560000	Active TSS	Fetal Brain Female	brain
18	chr3:159557200-159560200	Active TSS	Brain Germinal Matrix	brain
19	chr3:159557200-159560800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr3:159557400-159558000	Active TSS	iPS-18 Cell Line	embryonic stem cell
21	chr3:159557400-159558000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr3:159557400-159558000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
23	chr3:159557400-159558000	Flanking Active TSS	HMEC	breast
24	chr3:159557400-159558200	Active TSS	Primary hematopoietic stem cells	blood
25	chr3:159557400-159558200	Active TSS	Primary hematopoietic stem cells short term culture	blood
26	chr3:159557400-159558200	Flanking Active TSS	Fetal Muscle Leg	muscle
27	chr3:159557400-159558400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr3:159557400-159558400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
29	chr3:159557400-159558600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr3:159557400-159558600	Flanking Active TSS	Rectal Smooth Muscle	rectum
31	chr3:159557400-159558600	Active TSS	Right Atrium	heart
32	chr3:159557400-159558800	Active TSS	ES-I3 Cell Line	embryonic stem cell
33	chr3:159557400-159558800	Active TSS	Fetal Brain Male	brain
34	chr3:159557400-159559000	Active TSS	H1 Cell Line	embryonic stem cell
35	chr3:159557400-159559000	Active TSS	H9 Cell Line	embryonic stem cell
36	chr3:159557400-159559000	Active TSS	GM12878-XiMat	blood
37	chr3:159557400-159559200	Active TSS	iPS-20b Cell Line	embryonic stem cell
38	chr3:159557400-159559600	Active TSS	Brain Cingulate Gyrus	brain
39	chr3:159557400-159559600	Active TSS	Brain Hippocampus Middle	brain
40	chr3:159557400-159560000	Active TSS	Brain Substantia Nigra	brain
41	chr3:159557400-159560400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr3:159557400-159560400	Active TSS	Brain Angular Gyrus	brain
43	chr3:159557400-159561200	Active TSS	Brain Inferior Temporal Lobe	brain
44	chr3:159557600-159558000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr3:159557600-159558000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr3:159557600-159558000	Active TSS	HUES48 Cell Line	embryonic stem cell
47	chr3:159557600-159558000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr3:159557600-159558000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr3:159557600-159558000	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
50	chr3:159557600-159558000	Active TSS	Colon Smooth Muscle	Colon

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