Variant report

Variant	rs13066040
Chromosome Location	chr3:159583067-159583068
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159575817..159579356-chr3:159581555..159584258,3	MCF-7	breast:
2	chr17:57925518..57927077-chr3:159581643..159584059,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13064339	0.89[MEX][hapmap]
rs13065938	0.89[MEX][hapmap]
rs13066560	0.89[MEX][hapmap]
rs13075534	0.89[MEX][hapmap]
rs13077427	0.93[CEU][hapmap];0.89[MEX][hapmap];0.82[TSI][hapmap]
rs13078322	0.89[MEX][hapmap]
rs13100094	0.93[CEU][hapmap];0.89[MEX][hapmap];0.82[TSI][hapmap]
rs13100614	0.89[MEX][hapmap]
rs16830748	0.89[MEX][hapmap]
rs16830780	0.93[CEU][hapmap]
rs2126142	0.93[CEU][hapmap];0.89[MEX][hapmap];0.82[TSI][hapmap]
rs2366405	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6792870	0.93[CEU][hapmap]
rs7631400	0.93[CEU][hapmap];0.89[MEX][hapmap];0.82[TSI][hapmap]
rs9860588	0.93[CEU][hapmap]
rs9880487	0.93[CEU][hapmap]
rs9884085	0.93[CEU][hapmap]

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159572400-159589400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:159574800-159584800	Enhancers	Brain Angular Gyrus	brain
3	chr3:159574800-159586200	Weak transcription	Ovary	ovary
4	chr3:159576800-159584200	Enhancers	Fetal Heart	heart
5	chr3:159577800-159584800	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr3:159578200-159585600	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr3:159578600-159585200	Weak transcription	Fetal Intestine Large	intestine
8	chr3:159579200-159584200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr3:159579400-159583200	Weak transcription	Brain Germinal Matrix	brain
10	chr3:159579400-159584200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:159579400-159587400	Weak transcription	Fetal Intestine Small	intestine
12	chr3:159579400-159589600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:159579400-159589600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr3:159579600-159583200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:159579600-159584800	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr3:159579600-159589200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr3:159579600-159589600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr3:159579600-159589600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr3:159579600-159599200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:159579600-159600600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:159579800-159583200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr3:159579800-159585200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr3:159579800-159588600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr3:159580000-159590200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:159580200-159584800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr3:159580200-159585600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr3:159580200-159587800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr3:159580200-159589400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr3:159580200-159589400	Weak transcription	NHEK	skin
30	chr3:159580200-159597600	Weak transcription	Spleen	Spleen
31	chr3:159580400-159583200	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr3:159580400-159584800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr3:159580400-159585200	Weak transcription	Primary hematopoietic stem cells	blood
34	chr3:159580400-159586200	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr3:159581400-159584600	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr3:159581400-159585000	Enhancers	Brain Substantia Nigra	brain
37	chr3:159581600-159584200	Enhancers	Brain Anterior Caudate	brain
38	chr3:159581600-159584600	Enhancers	Rectal Smooth Muscle	rectum
39	chr3:159581600-159584800	Enhancers	Colon Smooth Muscle	Colon
40	chr3:159581600-159585200	Enhancers	Brain Cingulate Gyrus	brain
41	chr3:159581800-159584200	Enhancers	Fetal Kidney	kidney
42	chr3:159581800-159584400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr3:159581800-159584400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr3:159581800-159584800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr3:159581800-159585600	Enhancers	NHLF	lung
46	chr3:159582000-159584200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr3:159582200-159583400	Weak transcription	Fetal Brain Female	brain
48	chr3:159582200-159584000	Enhancers	Fetal Muscle Leg	muscle
49	chr3:159582400-159583200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr3:159582400-159583400	Flanking Active TSS	NHDF-Ad	bronchial

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