Variant report

Variant	rs7645825
Chromosome Location	chr3:28281551-28281552
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:28270683..28272455-chr3:28281452..28283015,2	MCF-7	breast:
2	chr3:28277439..28279511-chr3:28280296..28282426,2	MCF-7	breast:
3	chr3:28279814..28284603-chr3:28388127..28392296,9	K562	blood:
4	chr3:28270292..28273085-chr3:28279670..28282869,3	MCF-7	breast:
5	chr3:28279814..28285757-chr3:28388127..28392208,14	K562	blood:
6	chr3:28263497..28265020-chr3:28280684..28282522,2	K562	blood:
7	chr3:28281377..28282969-chr3:28334471..28336913,2	K562	blood:
8	chr3:28279618..28281224-chr3:28281299..28282942,2	MCF-7	breast:
9	chr3:28279881..28282644-chr3:28339325..28342183,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000206559	Chromatin interaction
ENSG00000163512	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10510607	0.91[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10510609	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs12054402	0.86[JPT][hapmap]
rs17021298	0.91[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.92[MKK][hapmap];0.87[ASN][1000 genomes]
rs1845166	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4502545	0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4680903	0.91[ASN][1000 genomes]
rs4680905	0.92[ASN][1000 genomes]
rs4680906	1.00[ASW][hapmap];0.94[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55954817	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56029590	0.87[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs56085195	0.87[ASN][1000 genomes]
rs56188445	0.91[ASN][1000 genomes]
rs6800659	0.82[CHB][hapmap];0.83[CHD][hapmap]
rs966029	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28274200-28282000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr3:28277400-28282000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr3:28279000-28281800	Weak transcription	Primary T cells from cord blood	blood
4	chr3:28279200-28282000	Weak transcription	NHDF-Ad	bronchial
5	chr3:28279800-28281800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr3:28280000-28282000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr3:28280000-28282200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr3:28280600-28282000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr3:28280800-28282200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr3:28281000-28281600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:28281000-28281600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr3:28281000-28281800	Enhancers	HepG2	liver
13	chr3:28281000-28282000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:28281000-28282000	Weak transcription	Psoas Muscle	Psoas
15	chr3:28281000-28282400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:28281000-28282600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr3:28281200-28281600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr3:28281200-28281600	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr3:28281200-28282000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr3:28281200-28282200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr3:28281200-28282200	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr3:28281200-28282400	Enhancers	Fetal Intestine Small	intestine
23	chr3:28281400-28281600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr3:28281400-28281800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr3:28281400-28281800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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