Variant report

Variant	rs966029
Chromosome Location	chr3:28265793-28265794
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1845166	0.94[CEU][hapmap];0.87[CHB][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2220742	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34692982	0.87[AFR][1000 genomes]
rs4680748	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs4680903	0.96[EUR][1000 genomes]
rs4680905	0.97[EUR][1000 genomes]
rs56188445	0.97[EUR][1000 genomes]
rs60425255	0.84[ASN][1000 genomes]
rs6800659	1.00[CHB][hapmap];0.86[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6810242	0.91[ASN][1000 genomes]
rs7614914	0.82[AFR][1000 genomes]
rs7633786	0.81[ASN][1000 genomes]
rs7645825	0.82[CHB][hapmap]
rs9637515	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876648	chr3:28060456-28280965	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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