Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:28248454..28250758-chr3:28282899..28284514,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000187118	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10510607	0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10510608	0.95[YRI][hapmap];0.84[AFR][1000 genomes]
rs10510609	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs12054402	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs17021276	0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs17021298	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17021326	0.95[YRI][hapmap];0.84[AFR][1000 genomes]
rs1955313	0.96[YRI][hapmap];0.83[AFR][1000 genomes]
rs2220742	0.96[EUR][1000 genomes]
rs4502545	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs4680903	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680905	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4680906	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs56188445	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56316071	0.85[AFR][1000 genomes]
rs59574091	0.85[AFR][1000 genomes]
rs60199196	0.82[AFR][1000 genomes]
rs61107194	0.85[AFR][1000 genomes]
rs61120501	0.85[AFR][1000 genomes]
rs6800659	0.87[CHB][hapmap]
rs72898218	0.89[AFR][1000 genomes]
rs72898222	0.89[AFR][1000 genomes]
rs73822329	0.85[AFR][1000 genomes]
rs73822564	0.91[AFR][1000 genomes]
rs7645825	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9637515	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs966029	0.94[CEU][hapmap];0.87[CHB][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876648	chr3:28060456-28280965	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv998002	chr3:28208676-28252031	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28247400-28251600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr3:28248200-28251400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr3:28250400-28250600	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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