Variant report

Variant	rs61120501
Chromosome Location	chr3:28268273-28268274
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:28264340..28266604-chr3:28267937..28269959,2	K562	blood:
2	chr3:28267433..28273143-chr3:28280771..28285939,7	K562	blood:

Variant related genes	Relation type
ENSG00000187118	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10510608	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11914283	1.00[EUR][1000 genomes]
rs11914462	1.00[EUR][1000 genomes]
rs11914828	1.00[EUR][1000 genomes]
rs11917441	1.00[EUR][1000 genomes]
rs11921493	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11923319	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11924235	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17021276	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17021326	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1845166	0.85[AFR][1000 genomes]
rs1955313	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34490679	1.00[EUR][1000 genomes]
rs4680903	0.84[AFR][1000 genomes]
rs55859737	1.00[EUR][1000 genomes]
rs55983177	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56316071	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56854865	1.00[EUR][1000 genomes]
rs59574091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60199196	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60457049	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60812941	1.00[EUR][1000 genomes]
rs61107194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6796693	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs72898218	0.92[AFR][1000 genomes]
rs72898222	0.92[AFR][1000 genomes]
rs73822328	1.00[EUR][1000 genomes]
rs73822329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73822336	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73822564	0.94[AFR][1000 genomes]
rs73822577	1.00[EUR][1000 genomes]
rs73822578	1.00[EUR][1000 genomes]
rs73825127	1.00[EUR][1000 genomes]
rs73825128	1.00[EUR][1000 genomes]
rs73825130	1.00[EUR][1000 genomes]
rs73825142	1.00[EUR][1000 genomes]
rs73825144	1.00[EUR][1000 genomes]
rs73825146	1.00[EUR][1000 genomes]
rs73825147	1.00[EUR][1000 genomes]
rs73825148	1.00[EUR][1000 genomes]
rs73825149	1.00[EUR][1000 genomes]
rs73825152	1.00[EUR][1000 genomes]
rs73825156	1.00[EUR][1000 genomes]
rs73825163	1.00[EUR][1000 genomes]
rs7642252	1.00[EUR][1000 genomes]
rs9682725	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876648	chr3:28060456-28280965	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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