Variant report

Variant	rs73825142
Chromosome Location	chr3:28418410-28418411
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:28391232..28393248-chr3:28418194..28419782,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10510608	1.00[EUR][1000 genomes]
rs11914283	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11914462	1.00[EUR][1000 genomes]
rs11914828	1.00[EUR][1000 genomes]
rs11917441	1.00[EUR][1000 genomes]
rs11918676	1.00[EUR][1000 genomes]
rs11921493	1.00[EUR][1000 genomes]
rs11924235	1.00[EUR][1000 genomes]
rs17021276	1.00[EUR][1000 genomes]
rs17021326	1.00[EUR][1000 genomes]
rs1955313	1.00[EUR][1000 genomes]
rs34490679	1.00[EUR][1000 genomes]
rs4605504	1.00[EUR][1000 genomes]
rs55859737	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55983177	1.00[EUR][1000 genomes]
rs56107762	0.85[AFR][1000 genomes]
rs56316071	1.00[EUR][1000 genomes]
rs56854865	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57260178	1.00[EUR][1000 genomes]
rs59014991	1.00[EUR][1000 genomes]
rs59574091	1.00[EUR][1000 genomes]
rs60199196	1.00[EUR][1000 genomes]
rs60457049	1.00[EUR][1000 genomes]
rs60812941	1.00[EUR][1000 genomes]
rs61107194	1.00[EUR][1000 genomes]
rs61120501	1.00[EUR][1000 genomes]
rs73822328	1.00[EUR][1000 genomes]
rs73822329	1.00[EUR][1000 genomes]
rs73822336	1.00[EUR][1000 genomes]
rs73822577	1.00[EUR][1000 genomes]
rs73822578	1.00[EUR][1000 genomes]
rs73822640	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73822641	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73822642	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73822643	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73825127	1.00[EUR][1000 genomes]
rs73825128	1.00[EUR][1000 genomes]
rs73825130	1.00[EUR][1000 genomes]
rs73825144	1.00[EUR][1000 genomes]
rs73825146	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73825147	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73825148	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73825149	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73825152	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73825156	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73825163	1.00[EUR][1000 genomes]
rs73825165	1.00[EUR][1000 genomes]
rs73825167	1.00[EUR][1000 genomes]
rs7638742	0.83[AFR][1000 genomes]
rs7642252	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7642709	1.00[EUR][1000 genomes]
rs9682725	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv979765	chr3:28401267-28427998	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28418000-28418600	Active TSS	Monocytes-CD14+_RO01746	blood
2	chr3:28418000-28418800	Active TSS	Fetal Lung	lung
3	chr3:28418200-28418600	Active TSS	Adipose Nuclei	Adipose
4	chr3:28418200-28419000	Enhancers	Hela-S3	cervix
5	chr3:28418400-28418800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:28418400-28418800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:28418400-28419000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:28418400-28419200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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