Variant report
Variant | rs7642709 |
---|---|
Chromosome Location | chr3:28493421-28493422 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10510608 | 1.00[EUR][1000 genomes] |
rs11914283 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11914462 | 1.00[EUR][1000 genomes] |
rs11917441 | 1.00[EUR][1000 genomes] |
rs11918676 | 1.00[EUR][1000 genomes] |
rs11921493 | 1.00[EUR][1000 genomes] |
rs11924235 | 1.00[EUR][1000 genomes] |
rs17021276 | 1.00[EUR][1000 genomes] |
rs17021326 | 1.00[EUR][1000 genomes] |
rs1955313 | 1.00[EUR][1000 genomes] |
rs34490679 | 1.00[EUR][1000 genomes] |
rs4605504 | 1.00[EUR][1000 genomes] |
rs55859737 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs56107762 | 0.80[AFR][1000 genomes] |
rs56316071 | 1.00[EUR][1000 genomes] |
rs56854865 | 0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs57260178 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs58228744 | 1.00[AMR][1000 genomes] |
rs59014991 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs60199196 | 1.00[EUR][1000 genomes] |
rs60457049 | 1.00[EUR][1000 genomes] |
rs60812941 | 1.00[EUR][1000 genomes] |
rs73822336 | 1.00[EUR][1000 genomes] |
rs73822577 | 1.00[EUR][1000 genomes] |
rs73822578 | 1.00[EUR][1000 genomes] |
rs73822640 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73822641 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73822642 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73822643 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73825127 | 1.00[EUR][1000 genomes] |
rs73825128 | 1.00[EUR][1000 genomes] |
rs73825130 | 1.00[EUR][1000 genomes] |
rs73825142 | 1.00[EUR][1000 genomes] |
rs73825144 | 1.00[EUR][1000 genomes] |
rs73825146 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73825147 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73825148 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73825149 | 0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73825152 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73825156 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73825163 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73825165 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73825167 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7638742 | 0.83[AMR][1000 genomes] |
rs7642252 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs9682725 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv3328565 | chr3:27991169-28915035 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
2 | nsv876649 | chr3:28126595-28718454 | Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 27 gene(s) | inside rSNPs | diseases |
3 | nsv876650 | chr3:28427029-28613602 | Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
4 | nsv1015015 | chr3:28461972-28728494 | Bivalent/Poised TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
5 | nsv916364 | chr3:28468275-29146280 | Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
6 | nsv590010 | chr3:28469830-28727214 | Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:28479800-28509000 | Weak transcription | Left Ventricle | heart |
2 | chr3:28483600-28497000 | Weak transcription | Brain Substantia Nigra | brain |
3 | chr3:28483800-28497600 | Weak transcription | Ovary | ovary |
4 | chr3:28489800-28495600 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
5 | chr3:28492200-28499800 | Weak transcription | Skeletal Muscle Male | skeletal muscle |
6 | chr3:28492600-28496000 | Weak transcription | Gastric | stomach |