Variant report

Variant	rs11924235
Chromosome Location	chr3:28317121-28317122
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:28308373..28310438-chr3:28316612..28319409,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10510608	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11914283	1.00[EUR][1000 genomes]
rs11914462	1.00[EUR][1000 genomes]
rs11914828	1.00[EUR][1000 genomes]
rs11917441	1.00[EUR][1000 genomes]
rs11918676	1.00[EUR][1000 genomes]
rs11921493	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11923319	0.85[AMR][1000 genomes]
rs17021276	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17021326	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1955313	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34490679	1.00[EUR][1000 genomes]
rs55859737	1.00[EUR][1000 genomes]
rs55983177	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56316071	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56854865	1.00[EUR][1000 genomes]
rs57260178	1.00[EUR][1000 genomes]
rs59014991	1.00[EUR][1000 genomes]
rs59574091	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60199196	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60457049	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60812941	1.00[EUR][1000 genomes]
rs61107194	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61120501	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73822328	1.00[EUR][1000 genomes]
rs73822329	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73822336	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73822566	0.93[AMR][1000 genomes]
rs73822577	1.00[EUR][1000 genomes]
rs73822578	1.00[EUR][1000 genomes]
rs73822640	1.00[EUR][1000 genomes]
rs73822641	1.00[EUR][1000 genomes]
rs73822642	1.00[EUR][1000 genomes]
rs73822643	1.00[EUR][1000 genomes]
rs73825127	1.00[EUR][1000 genomes]
rs73825128	1.00[EUR][1000 genomes]
rs73825130	1.00[EUR][1000 genomes]
rs73825142	1.00[EUR][1000 genomes]
rs73825144	1.00[EUR][1000 genomes]
rs73825146	1.00[EUR][1000 genomes]
rs73825147	1.00[EUR][1000 genomes]
rs73825148	1.00[EUR][1000 genomes]
rs73825149	1.00[EUR][1000 genomes]
rs73825152	1.00[EUR][1000 genomes]
rs73825156	1.00[EUR][1000 genomes]
rs73825163	1.00[EUR][1000 genomes]
rs73825165	1.00[EUR][1000 genomes]
rs73825167	1.00[EUR][1000 genomes]
rs7642252	1.00[EUR][1000 genomes]
rs7642709	1.00[EUR][1000 genomes]
rs9682725	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28284000-28317200	Weak transcription	Gastric	stomach
2	chr3:28284400-28321800	Weak transcription	NHLF	lung
3	chr3:28295600-28318200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr3:28303400-28322200	Weak transcription	Small Intestine	intestine
5	chr3:28303600-28340600	Weak transcription	NHEK	skin
6	chr3:28303800-28320800	Weak transcription	Placenta	Placenta
7	chr3:28304200-28332400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr3:28305600-28322600	Weak transcription	Osteobl	bone
9	chr3:28306400-28332400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr3:28306600-28335800	Weak transcription	Hela-S3	cervix
11	chr3:28307400-28317400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr3:28309000-28336600	Weak transcription	HUVEC	blood vessel
13	chr3:28310400-28321200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr3:28311200-28317200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr3:28311400-28319000	Weak transcription	Spleen	Spleen
16	chr3:28311600-28319200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr3:28313400-28322800	Weak transcription	Colonic Mucosa	Colon
18	chr3:28313800-28317200	ZNF genes & repeats	GM12878-XiMat	blood
19	chr3:28314200-28332400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr3:28314400-28317600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr3:28314400-28318600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr3:28314400-28332400	Weak transcription	Ovary	ovary
23	chr3:28314400-28365400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr3:28314600-28317400	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr3:28314600-28332600	Weak transcription	Left Ventricle	heart
26	chr3:28314800-28343400	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr3:28315000-28332400	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr3:28315000-28333000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr3:28315000-28363000	Weak transcription	A549	lung
30	chr3:28315200-28332200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr3:28315400-28320800	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr3:28315600-28319200	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr3:28315600-28325800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr3:28315600-28326400	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr3:28315600-28332400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr3:28315600-28332400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr3:28315600-28332400	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr3:28315800-28317600	ZNF genes & repeats	Fetal Muscle Leg	muscle
39	chr3:28315800-28318200	Weak transcription	Brain Cingulate Gyrus	brain
40	chr3:28315800-28318400	Weak transcription	Fetal Kidney	kidney
41	chr3:28315800-28320600	Weak transcription	Colon Smooth Muscle	Colon
42	chr3:28315800-28321200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr3:28315800-28332200	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr3:28315800-28332200	Weak transcription	Stomach Smooth Muscle	stomach
45	chr3:28315800-28332400	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr3:28316000-28317200	Strong transcription	Primary hematopoietic stem cells	blood
47	chr3:28316000-28322200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr3:28316000-28332000	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr3:28316200-28317400	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr3:28316200-28317600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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