Variant report
| Variant | rs11914828 |
|---|---|
| Chromosome Location | chr3:28273629-28273630 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:41)
| rs_ID | r2[population] |
|---|---|
| rs10510608 | 1.00[EUR][1000 genomes] |
| rs11914283 | 1.00[EUR][1000 genomes] |
| rs11914462 | 1.00[EUR][1000 genomes] |
| rs11917441 | 1.00[EUR][1000 genomes] |
| rs11921493 | 1.00[EUR][1000 genomes] |
| rs11924235 | 1.00[EUR][1000 genomes] |
| rs17021276 | 1.00[EUR][1000 genomes] |
| rs17021326 | 1.00[EUR][1000 genomes] |
| rs1955313 | 1.00[EUR][1000 genomes] |
| rs34490679 | 1.00[EUR][1000 genomes] |
| rs55859737 | 1.00[EUR][1000 genomes] |
| rs55983177 | 1.00[EUR][1000 genomes] |
| rs56316071 | 1.00[EUR][1000 genomes] |
| rs56854865 | 1.00[EUR][1000 genomes] |
| rs59014991 | 1.00[EUR][1000 genomes] |
| rs59574091 | 1.00[EUR][1000 genomes] |
| rs60199196 | 1.00[EUR][1000 genomes] |
| rs60457049 | 1.00[EUR][1000 genomes] |
| rs60812941 | 1.00[EUR][1000 genomes] |
| rs61107194 | 1.00[EUR][1000 genomes] |
| rs61120501 | 1.00[EUR][1000 genomes] |
| rs73822328 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73822329 | 1.00[EUR][1000 genomes] |
| rs73822336 | 1.00[EUR][1000 genomes] |
| rs73822577 | 1.00[EUR][1000 genomes] |
| rs73822578 | 1.00[EUR][1000 genomes] |
| rs73825127 | 1.00[EUR][1000 genomes] |
| rs73825128 | 1.00[EUR][1000 genomes] |
| rs73825130 | 1.00[EUR][1000 genomes] |
| rs73825142 | 1.00[EUR][1000 genomes] |
| rs73825144 | 1.00[EUR][1000 genomes] |
| rs73825146 | 1.00[EUR][1000 genomes] |
| rs73825147 | 1.00[EUR][1000 genomes] |
| rs73825148 | 1.00[EUR][1000 genomes] |
| rs73825149 | 1.00[EUR][1000 genomes] |
| rs73825152 | 1.00[EUR][1000 genomes] |
| rs73825156 | 1.00[EUR][1000 genomes] |
| rs73825163 | 1.00[EUR][1000 genomes] |
| rs73825165 | 1.00[EUR][1000 genomes] |
| rs7642252 | 1.00[EUR][1000 genomes] |
| rs9682725 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3328565 | chr3:27991169-28915035 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv876648 | chr3:28060456-28280965 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv876649 | chr3:28126595-28718454 | Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 27 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:28270000-28280800 | Weak transcription | H9 Cell Line | embryonic stem cell |
| 2 | chr3:28271800-28280600 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 3 | chr3:28273600-28273800 | Enhancers | Primary T helper naive cells from peripheral blood | blood |
