The 2.0 version of rSNPBase

Variant report

Variant rs60457049
Chromosome Location chr3:28290035-28290036
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:72 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:28283800-28311400 Weak transcription Lung lung
2 chr3:28284000-28290800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
3 chr3:28284000-28304800 Weak transcription Primary B cells from cord blood blood
4 chr3:28284000-28309600 Weak transcription Fetal Muscle Leg muscle
5 chr3:28284000-28313800 Weak transcription Ovary ovary
6 chr3:28284000-28317200 Weak transcription Gastric stomach
7 chr3:28284200-28292600 Weak transcription Psoas Muscle Psoas
8 chr3:28284200-28292800 Weak transcription Small Intestine intestine
9 chr3:28284400-28291400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
10 chr3:28284400-28292200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
11 chr3:28284400-28293600 Weak transcription Right Ventricle heart
12 chr3:28284400-28305400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
13 chr3:28284400-28305800 Weak transcription Hela-S3 cervix
14 chr3:28284400-28311000 Weak transcription Fetal Intestine Small intestine
15 chr3:28284400-28312600 Weak transcription Fetal Lung lung
16 chr3:28284400-28321800 Weak transcription NHLF lung
17 chr3:28284600-28291600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
18 chr3:28284600-28292200 Weak transcription NHEK skin
19 chr3:28284600-28292400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr3:28284600-28293400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
21 chr3:28284600-28305600 Weak transcription Breast Myoepithelial Primary Cells Breast
22 chr3:28284600-28306000 Weak transcription A549 lung
23 chr3:28284600-28307200 Weak transcription Fetal Intestine Large intestine
24 chr3:28284600-28311200 Weak transcription Fetal Adrenal Gland Adrenal Gland
25 chr3:28285200-28305200 Weak transcription Primary hematopoietic stem cells blood
26 chr3:28285200-28305600 Weak transcription Fetal Thymus thymus
27 chr3:28285400-28294000 Weak transcription iPS-18 Cell Line embryonic stem cell
28 chr3:28285600-28290200 Enhancers Primary T killer memory cells from peripheral blood blood
29 chr3:28285600-28315400 Weak transcription Skeletal Muscle Female skeletal muscle
30 chr3:28285800-28305400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
31 chr3:28285800-28311000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
32 chr3:28286000-28290200 Weak transcription Placenta Placenta
33 chr3:28286000-28292200 Weak transcription Primary hematopoietic stem cells short term culture blood
34 chr3:28286000-28292600 Weak transcription Sigmoid Colon Sigmoid Colon
35 chr3:28286000-28294000 Weak transcription H9 Cell Line embryonic stem cell
36 chr3:28286000-28306000 Weak transcription K562 blood
37 chr3:28286000-28307200 Weak transcription Rectal Mucosa Donor 31 rectum
38 chr3:28286200-28291400 Weak transcription Monocytes-CD14+_RO01746 blood
39 chr3:28286200-28294400 Weak transcription Spleen Spleen
40 chr3:28286400-28291200 Weak transcription Primary monocytes fromperipheralblood blood
41 chr3:28287200-28304800 Weak transcription Duodenum Mucosa Duodenum
42 chr3:28287600-28317000 Weak transcription Pancreas Pancrea
43 chr3:28288000-28293200 Enhancers Primary T helper naive cells from peripheral blood blood
44 chr3:28288200-28293600 Weak transcription HepG2 liver
45 chr3:28288400-28290200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
46 chr3:28288600-28293800 Weak transcription Pancreatic Islets Pancreatic Islet
47 chr3:28288600-28305200 Weak transcription Liver Liver
48 chr3:28288600-28311200 Weak transcription Esophagus oesophagus
49 chr3:28288800-28290400 Enhancers ES-I3 Cell Line embryonic stem cell
50 chr3:28288800-28291000 Enhancers iPS-15b Cell Line embryonic stem cell

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Last update: Aug 31, 2015