Variant report

Variant	rs72898222
Chromosome Location	chr3:28230667-28230668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10510608	0.90[AFR][1000 genomes]
rs11921493	0.81[AFR][1000 genomes]
rs17021276	0.89[AFR][1000 genomes]
rs17021326	0.90[AFR][1000 genomes]
rs1845166	0.89[AFR][1000 genomes]
rs1955313	0.89[AFR][1000 genomes]
rs4680903	0.87[AFR][1000 genomes]
rs56316071	0.92[AFR][1000 genomes]
rs59574091	0.92[AFR][1000 genomes]
rs60199196	0.88[AFR][1000 genomes]
rs61107194	0.92[AFR][1000 genomes]
rs61120501	0.92[AFR][1000 genomes]
rs72898218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73822329	0.92[AFR][1000 genomes]
rs73822336	0.83[AFR][1000 genomes]
rs73822564	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328565	chr3:27991169-28915035	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv876648	chr3:28060456-28280965	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv876649	chr3:28126595-28718454	Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv998002	chr3:28208676-28252031	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:28229000-28231800	Weak transcription	Muscle Satellite Cultured Cells	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links