Variant report
| Variant | rs73822564 |
|---|---|
| Chromosome Location | chr3:28239074-28239075 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:28235291..28239535-chr3:28281100..28284178,4 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000187118 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10510608 | 0.93[AFR][1000 genomes] |
| rs11921493 | 0.83[AFR][1000 genomes] |
| rs17021276 | 0.92[AFR][1000 genomes] |
| rs17021326 | 0.93[AFR][1000 genomes] |
| rs1845166 | 0.91[AFR][1000 genomes] |
| rs1955313 | 0.92[AFR][1000 genomes] |
| rs4680903 | 0.90[AFR][1000 genomes] |
| rs56316071 | 0.94[AFR][1000 genomes] |
| rs59574091 | 0.94[AFR][1000 genomes] |
| rs60199196 | 0.90[AFR][1000 genomes] |
| rs61107194 | 0.94[AFR][1000 genomes] |
| rs61120501 | 0.94[AFR][1000 genomes] |
| rs72898218 | 0.98[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs72898222 | 0.98[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs73822329 | 0.94[AFR][1000 genomes] |
| rs73822336 | 0.85[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3328565 | chr3:27991169-28915035 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv876648 | chr3:28060456-28280965 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv876649 | chr3:28126595-28718454 | Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 27 gene(s) | inside rSNPs | diseases |
| 4 | nsv998002 | chr3:28208676-28252031 | Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
