Variant report

Variant	rs765213
Chromosome Location	chr18:45469465-45469466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:45455746..45459266-chr18:45468829..45474273,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175387	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10432199	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10502890	0.92[CEU][hapmap]
rs10853560	0.82[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11082638	0.85[CEU][hapmap];0.87[CHB][hapmap];0.92[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11082639	0.93[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11082641	0.89[CEU][hapmap]
rs11874858	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12457664	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs12604337	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12605333	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12956483	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12968107	0.82[CEU][hapmap];0.92[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12968493	0.81[CEU][hapmap]
rs12969725	0.81[CEU][hapmap]
rs13381619	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs1539871	0.83[JPT][hapmap]
rs1539872	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1573362	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs1573363	0.82[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1613672	0.88[CHB][hapmap];0.92[JPT][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1631576	0.81[CEU][hapmap];0.84[JPT][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17741998	0.82[CEU][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1787176	0.88[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1787185	0.94[CHB][hapmap]
rs1787193	0.94[CHB][hapmap];0.90[YRI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1787194	0.88[CHB][hapmap];0.93[YRI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1787196	0.82[EUR][1000 genomes]
rs1787197	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1792653	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1792655	0.88[CHB][hapmap];0.90[YRI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1792668	0.81[CEU][hapmap]
rs1792669	0.82[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1792670	0.85[CEU][hapmap];0.87[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1792671	0.94[CHB][hapmap]
rs1792672	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1792675	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1792679	0.94[CHB][hapmap]
rs1792681	0.87[CHB][hapmap]
rs1792682	0.94[CHB][hapmap]
rs1792683	0.81[CHB][hapmap];0.92[JPT][hapmap];0.96[YRI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1792686	0.80[CEU][hapmap];0.81[CHB][hapmap]
rs1981	0.93[CHB][hapmap]
rs2000708	0.96[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2000709	0.93[CEU][hapmap];0.83[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2012555	0.85[CEU][hapmap];0.92[JPT][hapmap];0.82[EUR][1000 genomes]
rs2096932	0.81[CHB][hapmap];0.92[JPT][hapmap];0.93[YRI][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2096933	0.96[CEU][hapmap];0.92[JPT][hapmap];0.93[YRI][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28548478	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3813068	0.89[CEU][hapmap];0.96[YRI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4939672	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4940109	0.96[CEU][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4940110	0.96[CEU][hapmap];0.83[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4940120	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4940127	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61513611	0.81[AMR][1000 genomes]
rs62086544	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6507790	0.92[CEU][hapmap];0.92[JPT][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6507791	0.82[CEU][hapmap];0.92[JPT][hapmap];0.93[YRI][hapmap]
rs7228393	0.92[CEU][hapmap];0.92[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7231538	0.82[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7232764	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7232893	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7233129	0.82[CEU][hapmap];0.92[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7236177	0.85[CEU][hapmap];0.92[JPT][hapmap];0.96[YRI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7237544	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7243502	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs729112	0.85[CEU][hapmap];0.81[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs747952	0.82[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs747953	0.82[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8084915	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8095519	0.96[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8097580	0.83[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8097912	0.82[CEU][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8097925	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8099127	0.82[CEU][hapmap];0.81[CHB][hapmap];0.92[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8099681	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs948600	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs948601	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs948603	0.82[CEU][hapmap];0.92[JPT][hapmap];0.90[YRI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs948604	0.96[CEU][hapmap];0.87[CHB][hapmap];0.92[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9946556	0.94[CHB][hapmap];0.90[YRI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9947494	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9950207	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9955626	0.82[CEU][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes]
rs9961652	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9966637	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9966964	0.81[CEU][hapmap];0.83[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909614	chr18:45419421-45478490	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv909615	chr18:45452321-45493026	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45459600-45471600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr18:45468600-45471800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr18:45468800-45470600	Weak transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links