Variant report

Variant	rs8097925
Chromosome Location	chr18:45448872-45448873
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:45448291..45450129-chr18:45457101..45459149,2	MCF-7	breast:
2	chr18:45440386..45443120-chr18:45446937..45449451,2	MCF-7	breast:
3	chr18:45445551..45451271-chr18:45453158..45456977,7	K562	blood:

Variant related genes	Relation type
ENSG00000175387	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10432199	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10502890	0.81[EUR][1000 genomes]
rs10853560	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11082638	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11082639	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11874858	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12457664	0.83[EUR][1000 genomes]
rs12604337	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12605333	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12956483	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12968107	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13381619	0.88[ASN][1000 genomes]
rs1539872	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1573362	0.82[EUR][1000 genomes]
rs1573363	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1613672	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1631576	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17741998	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1787176	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1787193	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1787194	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1787195	0.81[AMR][1000 genomes]
rs1787196	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1787197	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1792653	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1792655	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1792669	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1792670	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1792672	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1792675	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1792683	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2000708	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2000709	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2012555	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2096932	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2096933	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28548478	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3813068	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4939672	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4940109	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4940110	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4940120	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4940127	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61513611	0.86[AMR][1000 genomes]
rs62086544	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6507790	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7228393	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7231538	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7232764	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7232893	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7233129	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7236177	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7237544	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7243502	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs729112	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs747952	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs747953	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs765213	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8084915	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8095519	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8097580	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8097912	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8099127	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8099681	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs948600	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs948601	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs948603	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs948604	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9946556	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9947494	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9950207	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9955626	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9961652	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9966637	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9966964	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909614	chr18:45419421-45478490	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45423200-45451400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr18:45433200-45455000	Weak transcription	Fetal Stomach	stomach
3	chr18:45433200-45455400	Weak transcription	Fetal Brain Male	brain
4	chr18:45433400-45452200	Weak transcription	Fetal Lung	lung
5	chr18:45434000-45454600	Weak transcription	Primary B cells from peripheral blood	blood
6	chr18:45435400-45452400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr18:45435600-45455800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr18:45438600-45454600	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr18:45438800-45453400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr18:45439000-45452200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr18:45439000-45452800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr18:45439000-45452800	Weak transcription	Aorta	Aorta
13	chr18:45439000-45456200	Weak transcription	Esophagus	oesophagus
14	chr18:45439000-45456200	Weak transcription	Spleen	Spleen
15	chr18:45439200-45453000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr18:45439200-45453400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr18:45439600-45455400	Weak transcription	Fetal Muscle Leg	muscle
18	chr18:45439800-45449600	Weak transcription	Right Ventricle	heart
19	chr18:45439800-45452800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr18:45439800-45454600	Weak transcription	Fetal Intestine Large	intestine
21	chr18:45439800-45456200	Weak transcription	Pancreas	Pancrea
22	chr18:45440000-45452400	Weak transcription	Fetal Intestine Small	intestine
23	chr18:45440600-45452400	Weak transcription	Adipose Nuclei	Adipose
24	chr18:45440600-45452400	Weak transcription	Brain Anterior Caudate	brain
25	chr18:45440800-45452400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr18:45441200-45453000	Weak transcription	Duodenum Mucosa	Duodenum
27	chr18:45442000-45454800	Weak transcription	Rectal Smooth Muscle	rectum
28	chr18:45442200-45449600	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr18:45442400-45449600	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr18:45442400-45452800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr18:45442400-45453400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr18:45442400-45453600	Weak transcription	NH-A	brain
33	chr18:45442400-45455000	Weak transcription	HSMM	muscle
34	chr18:45442600-45451400	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr18:45442600-45454600	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr18:45442800-45454400	Weak transcription	NHDF-Ad	bronchial
37	chr18:45443000-45456000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr18:45443600-45455000	Weak transcription	Osteobl	bone
39	chr18:45443800-45449000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr18:45444400-45454400	Enhancers	Primary T cells from cord blood	blood
41	chr18:45444800-45453200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr18:45444800-45456000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr18:45444800-45456000	Weak transcription	Lung	lung
44	chr18:45445000-45450600	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr18:45445400-45450000	Enhancers	A549	lung
46	chr18:45445400-45450400	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr18:45445400-45453000	Weak transcription	NHEK	skin
48	chr18:45446000-45449600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr18:45446000-45449600	Weak transcription	Psoas Muscle	Psoas
50	chr18:45446000-45449600	Weak transcription	Thymus	Thymus

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