Variant report

Variant	rs9961652
Chromosome Location	chr18:45473594-45473595
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:45455746..45459266-chr18:45468829..45474273,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175387	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10432199	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11082639	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11874858	0.82[AMR][1000 genomes]
rs12604337	0.80[EUR][1000 genomes]
rs12605333	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1539872	0.82[ASN][1000 genomes]
rs1573363	0.82[ASN][1000 genomes]
rs1613672	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2000708	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2000709	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2096933	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3813068	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4939672	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4940109	0.82[AMR][1000 genomes]
rs4940110	0.84[ASN][1000 genomes]
rs4940120	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4940127	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6507790	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7228393	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7232764	0.82[AMR][1000 genomes]
rs7232893	0.81[AMR][1000 genomes]
rs7236177	0.82[AMR][1000 genomes]
rs7237544	0.82[AMR][1000 genomes]
rs7243502	0.85[AMR][1000 genomes]
rs765213	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8084915	0.82[AMR][1000 genomes]
rs8095519	0.84[AMR][1000 genomes]
rs8097912	0.82[ASN][1000 genomes]
rs8097925	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs948601	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs948603	0.82[AMR][1000 genomes]
rs948604	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9947494	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9950207	0.82[AMR][1000 genomes]
rs9966964	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909614	chr18:45419421-45478490	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv909615	chr18:45452321-45493026	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45472400-45475200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr18:45472400-45479800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr18:45472600-45475600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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