Variant report

Variant	rs76603506
Chromosome Location	chr20:25732267-25732268
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM182B-1	chr20:25730940-25732440	XLOC_013708

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912834	chr20:25615272-25756336	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1056288	chr20:25662941-25744711	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1057618	chr20:25665455-25744711	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2758517	chr20:25701992-26319569	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
5	esv2758790	chr20:25701992-26319569	Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
6	nsv1062442	chr20:25714010-25754838	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv470545	chr20:25715507-26309255	Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
8	esv18917	chr20:25731048-25780918	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv820681	chr20:25731048-25780918	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25730600-25732400	Active TSS	Rectal Smooth Muscle	rectum
2	chr20:25731200-25732400	Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr20:25731200-25732400	Active TSS	Primary T cells fromperipheralblood	blood
4	chr20:25731200-25732400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr20:25731200-25732400	Enhancers	Fetal Heart	heart
6	chr20:25731200-25732400	Active TSS	Fetal Intestine Small	intestine
7	chr20:25731200-25732400	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr20:25731200-25732600	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr20:25731200-25732600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr20:25731200-25732600	Active TSS	Fetal Intestine Large	intestine
11	chr20:25731200-25732800	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr20:25731200-25732800	Enhancers	Spleen	Spleen
13	chr20:25731400-25732400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr20:25731400-25732400	Active TSS	Primary T cells from cord blood	blood
15	chr20:25731400-25732400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr20:25731400-25732400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr20:25731400-25732400	Active TSS	Brain Germinal Matrix	brain
18	chr20:25731400-25732400	Active TSS	Pancreatic Islets	Pancreatic Islet
19	chr20:25731400-25732400	Active TSS	Ovary	ovary
20	chr20:25731400-25732400	Active TSS	Stomach Mucosa	stomach
21	chr20:25731400-25732400	Active TSS	NH-A	brain
22	chr20:25731400-25732400	Active TSS	NHLF	lung
23	chr20:25731400-25732600	Active TSS	H1 Cell Line	embryonic stem cell
24	chr20:25731400-25732600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr20:25731400-25732600	Active TSS	Fetal Brain Male	brain
26	chr20:25731400-25732600	Active TSS	Fetal Kidney	kidney
27	chr20:25731600-25732400	Active TSS	HUES6 Cell Line	embryonic stem cell
28	chr20:25731600-25732400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr20:25731600-25732400	Active TSS	Primary B cells from peripheral blood	blood
30	chr20:25731600-25732400	Active TSS	Primary hematopoietic stem cells	blood
31	chr20:25731600-25732400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
32	chr20:25731600-25732400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr20:25731600-25732400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr20:25731600-25732400	Active TSS	Colon Smooth Muscle	Colon
35	chr20:25731600-25732400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
36	chr20:25731600-25732400	Active TSS	Fetal Stomach	stomach
37	chr20:25731600-25732400	Enhancers	Placenta Amnion	Placenta Amnion
38	chr20:25731600-25732400	Active TSS	HMEC	breast
39	chr20:25731600-25732400	Active TSS	Osteobl	bone
40	chr20:25731600-25732600	Active TSS	A549	lung
41	chr20:25731600-25732600	Active TSS	NHEK	skin
42	chr20:25731800-25732400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
43	chr20:25732000-25732400	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr20:25732000-25732400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
45	chr20:25732000-25732400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
46	chr20:25732000-25732400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
47	chr20:25732000-25732400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
48	chr20:25732000-25732400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
49	chr20:25732000-25732400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
50	chr20:25732000-25732400	Flanking Active TSS	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links