Variant report

Variant	rs7663500
Chromosome Location	chr4:89787387-89787388
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11930723	1.00[AMR][1000 genomes]
rs11935135	1.00[AMR][1000 genomes]
rs11944060	1.00[AMR][1000 genomes]
rs11944063	1.00[AMR][1000 genomes]
rs11944131	1.00[AMR][1000 genomes]
rs11944133	1.00[AMR][1000 genomes]
rs35988187	0.89[AFR][1000 genomes]
rs6847513	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7666383	0.89[AFR][1000 genomes]
rs7673199	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7690981	0.89[AFR][1000 genomes]
rs7694851	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009354	chr4:89725914-89985155	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:89768800-89789400	Weak transcription	Fetal Intestine Small	intestine
2	chr4:89771000-89803200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:89780800-89800600	Weak transcription	Pancreas	Pancrea
4	chr4:89781000-89788200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:89782400-89801200	Weak transcription	Ovary	ovary
6	chr4:89785800-89788800	Enhancers	HMEC	breast
7	chr4:89785800-89789000	Enhancers	NHEK	skin
8	chr4:89786000-89787600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:89786000-89788000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:89786000-89788800	Enhancers	NHDF-Ad	bronchial
11	chr4:89786200-89788200	Weak transcription	HSMM	muscle
12	chr4:89786400-89789000	Enhancers	HUVEC	blood vessel
13	chr4:89786600-89787400	Enhancers	Fetal Stomach	stomach
14	chr4:89786800-89787400	Enhancers	Placenta	Placenta
15	chr4:89786800-89787800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:89786800-89787800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr4:89786800-89787800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr4:89786800-89787800	Weak transcription	Osteobl	bone
19	chr4:89786800-89788000	Weak transcription	NHLF	lung
20	chr4:89787000-89787800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr4:89787000-89788200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr4:89787000-89788200	Weak transcription	Hela-S3	cervix
23	chr4:89787200-89787400	Enhancers	Stomach Smooth Muscle	stomach
24	chr4:89787200-89788200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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