Variant report

Variant	rs7673199
Chromosome Location	chr4:89783701-89783702
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11930723	1.00[AMR][1000 genomes]
rs11935135	1.00[AMR][1000 genomes]
rs11944060	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs11944063	1.00[AMR][1000 genomes]
rs11944131	1.00[AMR][1000 genomes]
rs11944133	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs35988187	0.80[AFR][1000 genomes]
rs6847513	1.00[AMR][1000 genomes]
rs7663500	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7666383	0.80[AFR][1000 genomes]
rs7690981	0.80[AFR][1000 genomes]
rs7694851	0.83[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009354	chr4:89725914-89985155	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:89768800-89789400	Weak transcription	Fetal Intestine Small	intestine
2	chr4:89771000-89803200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:89773600-89784200	Weak transcription	Gastric	stomach
4	chr4:89780800-89786000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:89780800-89786000	Weak transcription	NHDF-Ad	bronchial
6	chr4:89780800-89786000	Weak transcription	Osteobl	bone
7	chr4:89780800-89800600	Weak transcription	Pancreas	Pancrea
8	chr4:89781000-89788200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr4:89781600-89783800	Enhancers	Colon Smooth Muscle	Colon
10	chr4:89781800-89786400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:89782000-89784600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr4:89782000-89786600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:89782000-89786800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr4:89782200-89784000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr4:89782200-89784200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr4:89782200-89784600	Weak transcription	Fetal Lung	lung
17	chr4:89782200-89786000	Weak transcription	NHLF	lung
18	chr4:89782200-89786800	Weak transcription	Placenta	Placenta
19	chr4:89782400-89784200	Weak transcription	Fetal Stomach	stomach
20	chr4:89782400-89801200	Weak transcription	Ovary	ovary
21	chr4:89782600-89786800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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