Variant report

Variant	rs7690981
Chromosome Location	chr4:89810415-89810416
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11930510	1.00[AMR][1000 genomes]
rs11935197	1.00[AMR][1000 genomes]
rs11941980	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11942849	1.00[AMR][1000 genomes]
rs11945054	1.00[AMR][1000 genomes]
rs11946359	1.00[AMR][1000 genomes]
rs11947489	1.00[AMR][1000 genomes]
rs35988187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72665854	1.00[AMR][1000 genomes]
rs7655875	1.00[AMR][1000 genomes]
rs7663500	0.89[AFR][1000 genomes]
rs7666383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7673199	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009354	chr4:89725914-89985155	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv998651	chr4:89800245-89933445	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv537175	chr4:89800245-89933445	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:89801800-89810600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:89802200-89820600	Weak transcription	Aorta	Aorta
3	chr4:89802600-89812800	Weak transcription	K562	blood
4	chr4:89802600-89825600	Weak transcription	Ovary	ovary
5	chr4:89805400-89817600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:89809200-89828800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:89809400-89813400	Enhancers	Fetal Intestine Small	intestine
8	chr4:89810000-89811400	Enhancers	Placenta	Placenta
9	chr4:89810200-89810600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr4:89810200-89811400	Enhancers	Psoas Muscle	Psoas
11	chr4:89810200-89811400	Enhancers	HepG2	liver
12	chr4:89810400-89811600	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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