Variant report

Variant	rs7664385
Chromosome Location	chr4:54612049-54612050
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17083326	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs17083355	0.82[ASN][1000 genomes]
rs28459143	0.88[ASN][1000 genomes]
rs28484855	0.80[ASN][1000 genomes]
rs28589490	0.84[ASN][1000 genomes]
rs28613767	0.80[ASN][1000 genomes]
rs60293431	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6844085	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs728587	0.80[ASN][1000 genomes]
rs7664559	0.82[AFR][1000 genomes]
rs7671090	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879015	chr4:54596466-54665559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54611200-54612200	Weak transcription	Fetal Brain Male	brain
2	chr4:54611600-54612800	Weak transcription	GM12878-XiMat	blood
3	chr4:54612000-54612400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr4:54612000-54616000	Enhancers	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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