Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GSX2-2	chr4:54599354-54600525	ENSG00000249341.1

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17083326	0.90[ASN][1000 genomes]
rs17083355	0.94[ASN][1000 genomes]
rs17676844	0.83[AFR][1000 genomes]
rs17676926	0.85[AFR][1000 genomes]
rs1903826	0.93[AFR][1000 genomes]
rs28385358	0.83[AFR][1000 genomes]
rs28408784	0.93[AFR][1000 genomes]
rs28429195	0.86[AFR][1000 genomes]
rs28439455	0.85[AFR][1000 genomes]
rs28484855	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28523988	0.85[AFR][1000 genomes]
rs28589490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28613767	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28623562	0.92[AFR][1000 genomes]
rs28716961	0.85[AFR][1000 genomes]
rs56753131	0.90[ASN][1000 genomes]
rs57050614	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60293431	0.94[ASN][1000 genomes]
rs6844085	1.00[ASN][1000 genomes]
rs728587	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7664385	0.88[ASN][1000 genomes]
rs7671090	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv15357	chr4:54591392-54603209	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879015	chr4:54596466-54665559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54584000-54600000	Weak transcription	Osteobl	bone
2	chr4:54597000-54600200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:54598400-54600600	Enhancers	NHDF-Ad	bronchial
4	chr4:54598400-54601000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:54598400-54601000	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr4:54598400-54602600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr4:54598600-54600000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:54599200-54600800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr4:54599400-54600600	Enhancers	NHLF	lung
10	chr4:54599600-54600600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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