Variant report

Variant	rs28385358
Chromosome Location	chr4:54603345-54603346
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54601577..54603651-chr4:54607437..54610085,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10028338	0.89[EUR][1000 genomes]
rs10031863	0.86[EUR][1000 genomes]
rs10049838	0.81[EUR][1000 genomes]
rs10517293	0.92[EUR][1000 genomes]
rs1551879	0.84[AMR][1000 genomes]
rs1551881	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17676844	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17676926	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1903826	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28408784	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28429195	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28439455	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28459143	0.83[AFR][1000 genomes]
rs28491549	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28523988	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28589490	0.83[AFR][1000 genomes]
rs28610185	0.81[EUR][1000 genomes]
rs28623562	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28694496	0.81[EUR][1000 genomes]
rs28716961	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55697814	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55821336	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61561463	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73250990	0.86[EUR][1000 genomes]
rs73250992	0.86[EUR][1000 genomes]
rs73250993	0.86[EUR][1000 genomes]
rs73250995	0.81[EUR][1000 genomes]
rs73250998	0.81[EUR][1000 genomes]
rs73250999	0.81[EUR][1000 genomes]
rs73817107	0.81[EUR][1000 genomes]
rs9997817	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879015	chr4:54596466-54665559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54600000-54603400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:54601200-54603400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:54601200-54603400	Enhancers	NHDF-Ad	bronchial
4	chr4:54601800-54603400	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links