Variant report

Variant	rs10049838
Chromosome Location	chr4:54643027-54643028
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54637798..54639736-chr4:54642892..54644483,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10007326	0.97[EUR][1000 genomes]
rs10028338	0.86[EUR][1000 genomes]
rs10031863	0.83[EUR][1000 genomes]
rs10517293	0.88[EUR][1000 genomes]
rs1551881	0.88[EUR][1000 genomes]
rs17676844	0.88[EUR][1000 genomes]
rs17676926	0.88[EUR][1000 genomes]
rs1903826	0.88[EUR][1000 genomes]
rs28385358	0.81[EUR][1000 genomes]
rs28408784	0.88[EUR][1000 genomes]
rs28416484	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28429195	0.88[EUR][1000 genomes]
rs28439455	0.88[EUR][1000 genomes]
rs28491549	0.88[EUR][1000 genomes]
rs28523988	0.88[EUR][1000 genomes]
rs28592900	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28610185	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28623562	0.88[EUR][1000 genomes]
rs28631447	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28694496	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28716961	0.88[EUR][1000 genomes]
rs55697814	0.88[EUR][1000 genomes]
rs55821336	0.88[EUR][1000 genomes]
rs55980777	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61561463	0.88[EUR][1000 genomes]
rs73250990	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73250992	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73250993	0.94[EUR][1000 genomes]
rs73250995	1.00[EUR][1000 genomes]
rs73250997	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73250998	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73250999	1.00[EUR][1000 genomes]
rs73251000	0.97[EUR][1000 genomes]
rs73817107	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9997817	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879015	chr4:54596466-54665559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879016	chr4:54638218-54710952	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54633400-54643200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:54636200-54643600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:54638800-54643400	Weak transcription	Fetal Stomach	stomach
4	chr4:54642800-54644800	Enhancers	NHLF	lung
5	chr4:54642800-54645400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:54643000-54645200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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