Variant report

Variant	rs1551881
Chromosome Location	chr4:54579014-54579015
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10007326	0.86[EUR][1000 genomes]
rs10028338	0.97[EUR][1000 genomes]
rs10031863	0.87[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10049838	0.88[EUR][1000 genomes]
rs10517293	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1551879	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17676844	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17676926	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1903826	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28385358	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28408784	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28416484	0.86[EUR][1000 genomes]
rs28429195	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28439455	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28491549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28523988	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28592900	0.86[EUR][1000 genomes]
rs28610185	0.88[EUR][1000 genomes]
rs28623562	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28631447	0.84[EUR][1000 genomes]
rs28694496	0.88[EUR][1000 genomes]
rs28716961	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55697814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55821336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55980777	0.86[EUR][1000 genomes]
rs61561463	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73250990	0.94[EUR][1000 genomes]
rs73250992	0.94[EUR][1000 genomes]
rs73250993	0.94[EUR][1000 genomes]
rs73250995	0.88[EUR][1000 genomes]
rs73250998	0.88[EUR][1000 genomes]
rs73250999	0.88[EUR][1000 genomes]
rs73251000	0.86[EUR][1000 genomes]
rs73817107	0.88[EUR][1000 genomes]
rs9997817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54569600-54580200	Weak transcription	HSMM	muscle
2	chr4:54569600-54583200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:54573200-54580200	Weak transcription	NHLF	lung
4	chr4:54573200-54581400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr4:54577400-54581200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:54577400-54581400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:54577600-54579200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:54577600-54579200	Enhancers	Ovary	ovary
9	chr4:54577600-54584000	Enhancers	Osteobl	bone
10	chr4:54577800-54579800	Enhancers	Fetal Muscle Leg	muscle
11	chr4:54577800-54581400	Enhancers	NHDF-Ad	bronchial
12	chr4:54577800-54583600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:54578400-54579400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr4:54578400-54582800	Weak transcription	Fetal Stomach	stomach
15	chr4:54578600-54579200	Enhancers	NH-A	brain
16	chr4:54578800-54579400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr4:54578800-54580400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr4:54578800-54580400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:54578800-54583400	Weak transcription	Aorta	Aorta
20	chr4:54579000-54579800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr4:54579000-54583000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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