Variant report

Variant	rs1551879
Chromosome Location	chr4:54578674-54578675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10028338	0.84[EUR][1000 genomes]
rs10031863	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10517293	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1551881	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17676844	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17676926	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1903826	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28385358	0.84[AMR][1000 genomes]
rs28408784	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28429195	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28439455	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28491549	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28523988	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28623562	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28716961	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55697814	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55821336	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61561463	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73250990	0.82[EUR][1000 genomes]
rs73250992	0.82[EUR][1000 genomes]
rs73250993	0.82[EUR][1000 genomes]
rs9997817	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54569600-54580200	Weak transcription	HSMM	muscle
2	chr4:54569600-54583200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:54573200-54580200	Weak transcription	NHLF	lung
4	chr4:54573200-54581400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr4:54577400-54581200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:54577400-54581400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:54577600-54579000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr4:54577600-54579200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:54577600-54579200	Enhancers	Ovary	ovary
10	chr4:54577600-54584000	Enhancers	Osteobl	bone
11	chr4:54577800-54578800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr4:54577800-54578800	Enhancers	Fetal Muscle Trunk	muscle
13	chr4:54577800-54578800	Enhancers	Pancreas	Pancrea
14	chr4:54577800-54578800	Enhancers	Right Atrium	heart
15	chr4:54577800-54579800	Enhancers	Fetal Muscle Leg	muscle
16	chr4:54577800-54581400	Enhancers	NHDF-Ad	bronchial
17	chr4:54577800-54583600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr4:54578000-54578800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:54578000-54578800	Enhancers	Placenta	Placenta
20	chr4:54578200-54579000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr4:54578400-54579000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr4:54578400-54579400	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr4:54578400-54582800	Weak transcription	Fetal Stomach	stomach
24	chr4:54578600-54578800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr4:54578600-54578800	Enhancers	Adipose Nuclei	Adipose
26	chr4:54578600-54578800	Enhancers	Aorta	Aorta
27	chr4:54578600-54579200	Enhancers	NH-A	brain

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