Variant report

Variant	rs10031863
Chromosome Location	chr4:54570419-54570420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54568125..54570977-chr4:54571339..54573651,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10007326	0.80[EUR][1000 genomes]
rs10028338	0.91[EUR][1000 genomes]
rs10049838	0.83[EUR][1000 genomes]
rs10517293	0.97[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1551879	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1551881	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17676844	0.94[EUR][1000 genomes]
rs17676926	0.94[EUR][1000 genomes]
rs1903826	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs28385358	0.86[EUR][1000 genomes]
rs28408784	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs28416484	0.80[EUR][1000 genomes]
rs28429195	0.94[EUR][1000 genomes]
rs28439455	0.94[EUR][1000 genomes]
rs28491549	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28523988	0.94[EUR][1000 genomes]
rs28592900	0.80[EUR][1000 genomes]
rs28610185	0.83[EUR][1000 genomes]
rs28623562	0.94[EUR][1000 genomes]
rs28694496	0.83[EUR][1000 genomes]
rs28716961	0.94[EUR][1000 genomes]
rs55697814	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55821336	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55980777	0.80[EUR][1000 genomes]
rs61561463	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73250990	0.88[EUR][1000 genomes]
rs73250992	0.88[EUR][1000 genomes]
rs73250993	0.88[EUR][1000 genomes]
rs73250995	0.83[EUR][1000 genomes]
rs73250998	0.83[EUR][1000 genomes]
rs73250999	0.83[EUR][1000 genomes]
rs73251000	0.80[EUR][1000 genomes]
rs73817107	0.83[EUR][1000 genomes]
rs9997817	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54569200-54573200	Enhancers	Primary B cells from peripheral blood	blood
2	chr4:54569400-54570600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr4:54569400-54571400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:54569400-54572400	Weak transcription	Psoas Muscle	Psoas
5	chr4:54569400-54572800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:54569400-54573200	Enhancers	Primary B cells from cord blood	blood
7	chr4:54569400-54577200	Weak transcription	Aorta	Aorta
8	chr4:54569600-54570600	Enhancers	Fetal Kidney	kidney
9	chr4:54569600-54570800	Enhancers	GM12878-XiMat	blood
10	chr4:54569600-54570800	Enhancers	NHDF-Ad	bronchial
11	chr4:54569600-54572000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr4:54569600-54572800	Weak transcription	Gastric	stomach
13	chr4:54569600-54572800	Weak transcription	Pancreas	Pancrea
14	chr4:54569600-54573200	Weak transcription	Colonic Mucosa	Colon
15	chr4:54569600-54580200	Weak transcription	HSMM	muscle
16	chr4:54569600-54583200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr4:54569800-54570800	Weak transcription	Lung	lung
18	chr4:54569800-54571000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr4:54569800-54571200	Weak transcription	Small Intestine	intestine
20	chr4:54569800-54571400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr4:54569800-54571600	Weak transcription	Fetal Muscle Trunk	muscle
22	chr4:54569800-54572000	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr4:54569800-54572800	Weak transcription	Ovary	ovary
24	chr4:54569800-54572800	Weak transcription	Spleen	Spleen
25	chr4:54569800-54577800	Weak transcription	Right Atrium	heart
26	chr4:54569800-54578600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr4:54570000-54571200	Weak transcription	A549	lung
28	chr4:54570000-54571200	Weak transcription	NH-A	brain
29	chr4:54570000-54571400	Weak transcription	Primary hematopoietic stem cells	blood
30	chr4:54570000-54571400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr4:54570000-54571400	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr4:54570000-54572200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr4:54570000-54572400	Weak transcription	Liver	Liver
34	chr4:54570200-54570600	Weak transcription	Brain Hippocampus Middle	brain
35	chr4:54570200-54571200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr4:54570200-54571200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr4:54570200-54571200	Weak transcription	HUVEC	blood vessel
38	chr4:54570200-54571400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr4:54570200-54571400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr4:54570200-54571400	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr4:54570200-54571400	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr4:54570200-54571400	Weak transcription	NHLF	lung
43	chr4:54570200-54571400	Weak transcription	Osteobl	bone
44	chr4:54570200-54572000	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr4:54570200-54572400	Weak transcription	Fetal Heart	heart
46	chr4:54570200-54577800	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr4:54570400-54571400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr4:54570400-54571600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr4:54570400-54572000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr4:54570400-54572600	Weak transcription	Adipose Nuclei	Adipose

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