Variant report

Variant	rs7676888
Chromosome Location	chr4:62164761-62164762
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10027782	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10030989	0.94[ASN][1000 genomes]
rs1021925	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1021926	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1032895	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1159029	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1505678	0.94[ASN][1000 genomes]
rs17466134	0.81[ASN][1000 genomes]
rs1809992	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2135241	0.94[ASN][1000 genomes]
rs2135242	1.00[ASN][1000 genomes]
rs2342454	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2342716	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4241638	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4580682	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6551621	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7655251	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7696470	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62151400-62164800	Weak transcription	Brain Anterior Caudate	brain
2	chr4:62158600-62169600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr4:62159000-62164800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:62159000-62167200	Weak transcription	Brain Substantia Nigra	brain
5	chr4:62159000-62169600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:62159000-62174000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:62160200-62168000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr4:62160600-62169000	Weak transcription	Brain Angular Gyrus	brain
9	chr4:62160800-62167000	Weak transcription	Fetal Lung	lung
10	chr4:62162000-62167000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr4:62162200-62169000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr4:62162200-62171400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr4:62163000-62165200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr4:62163400-62164800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr4:62163400-62165400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr4:62163600-62164800	Weak transcription	Fetal Brain Male	brain
17	chr4:62164000-62164800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr4:62164000-62165400	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr4:62164200-62165200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:62164200-62165400	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr4:62164200-62171200	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr4:62164600-62165600	Enhancers	HUES48 Cell Line	embryonic stem cell

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