Variant report

Variant	rs2342454
Chromosome Location	chr4:62167519-62167520
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10027782	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs10030989	0.85[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1021925	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1021926	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1032895	0.85[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1159029	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11723669	1.00[CHB][hapmap]
rs13151711	1.00[CHB][hapmap]
rs1505678	0.85[CEU][hapmap];1.00[CHB][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1505679	1.00[CHB][hapmap]
rs17466134	0.81[ASN][1000 genomes]
rs1809992	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2135241	0.94[ASN][1000 genomes]
rs2135242	0.85[CEU][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2342716	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4241638	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4580682	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4860410	1.00[CHB][hapmap]
rs6551621	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6551623	1.00[CHB][hapmap]
rs7655251	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7676888	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7696470	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62158600-62169600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr4:62159000-62169600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:62159000-62174000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:62160200-62168000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr4:62160600-62169000	Weak transcription	Brain Angular Gyrus	brain
6	chr4:62162200-62169000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr4:62162200-62171400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr4:62164200-62171200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr4:62165200-62169000	Weak transcription	Brain Anterior Caudate	brain
10	chr4:62165200-62169600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr4:62165400-62169800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr4:62165600-62167800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr4:62166200-62168000	Enhancers	Fetal Brain Male	brain
14	chr4:62166400-62171400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:62167000-62167600	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr4:62167000-62168000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr4:62167000-62170600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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