Variant report

Variant	rs13151711
Chromosome Location	chr4:62172534-62172535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10001314	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10027782	1.00[CHB][hapmap];0.85[CHD][hapmap]
rs10030989	1.00[CHB][hapmap]
rs1021925	1.00[CHB][hapmap]
rs1021926	1.00[CHB][hapmap]
rs1032895	1.00[CHB][hapmap]
rs11723669	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs13119161	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1505678	1.00[CHB][hapmap]
rs1505679	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1809992	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[MEX][hapmap];0.80[AMR][1000 genomes]
rs1847734	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2342454	1.00[CHB][hapmap]
rs2342716	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs4241638	1.00[CHB][hapmap];0.80[AMR][1000 genomes]
rs4580682	1.00[CHB][hapmap]
rs4860410	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62314360	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6551621	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[MEX][hapmap]
rs6551623	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7655251	1.00[CHB][hapmap]
rs7659954	0.84[ASN][1000 genomes]
rs7696470	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62159000-62174000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:62169800-62173200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr4:62170000-62173600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:62170400-62173400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:62171200-62175200	Weak transcription	Fetal Brain Male	brain
6	chr4:62171800-62175400	Weak transcription	H9 Cell Line	embryonic stem cell

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