Variant report

Variant	rs62314360
Chromosome Location	chr4:62185672-62185673
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10001314	0.84[ASN][1000 genomes]
rs11723669	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13119161	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13151711	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1505679	1.00[ASN][1000 genomes]
rs1847734	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4860410	1.00[ASN][1000 genomes]
rs62314361	1.00[AFR][1000 genomes]
rs6551623	0.84[ASN][1000 genomes]
rs7659954	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62175600-62188400	Weak transcription	Aorta	Aorta
2	chr4:62178600-62185800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr4:62184400-62188400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr4:62185000-62186800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr4:62185200-62186000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:62185400-62188200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:62185600-62186400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:62185600-62186400	Enhancers	Stomach Mucosa	stomach
9	chr4:62185600-62186600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr4:62185600-62186600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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