Variant report

Variant	rs1505679
Chromosome Location	chr4:62198201-62198202
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10001314	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10027782	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10030989	1.00[CHB][hapmap];0.85[YRI][hapmap];0.80[AMR][1000 genomes]
rs1021925	1.00[CHB][hapmap]
rs1021926	1.00[CHB][hapmap]
rs1032895	1.00[CHB][hapmap]
rs11723669	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13119161	0.84[ASW][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.94[MEX][hapmap];0.81[MKK][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13151711	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1505678	1.00[CHB][hapmap];0.81[YRI][hapmap];0.80[AMR][1000 genomes]
rs1809992	1.00[CHB][hapmap];0.85[CHD][hapmap];0.90[MEX][hapmap]
rs1847734	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2135242	0.87[YRI][hapmap];0.80[AMR][1000 genomes]
rs2342454	1.00[CHB][hapmap]
rs2342716	1.00[CHB][hapmap];0.85[CHD][hapmap]
rs4241638	1.00[CHB][hapmap]
rs4580682	1.00[CHB][hapmap]
rs4860410	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62314360	1.00[ASN][1000 genomes]
rs62314365	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6551621	1.00[CHB][hapmap];0.85[CHD][hapmap];0.90[MEX][hapmap]
rs6551623	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7655251	1.00[CHB][hapmap]
rs7659954	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7696470	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv461376	chr4:62187646-62274626	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv594327	chr4:62187646-62274626	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv3325937	chr4:62196057-62199355	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3452093	chr4:62196607-62199205	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62186600-62202800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:62190200-62200600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr4:62194000-62202000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr4:62194800-62200600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr4:62196200-62198400	Weak transcription	Fetal Lung	lung

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