Variant report

Variant	rs62314365
Chromosome Location	chr4:62224632-62224633
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10001314	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11723669	0.94[EUR][1000 genomes]
rs1505679	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4860410	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6551623	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs746822	0.81[AFR][1000 genomes]
rs7659954	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv461376	chr4:62187646-62274626	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv594327	chr4:62187646-62274626	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62220800-62226400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:62222600-62226600	Weak transcription	Brain Anterior Caudate	brain
3	chr4:62222800-62226600	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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