Variant report

Variant	rs11723669
Chromosome Location	chr4:62202922-62202923
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10001314	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10027782	1.00[CHB][hapmap]
rs10030989	1.00[CHB][hapmap]
rs1021925	1.00[CHB][hapmap]
rs1021926	1.00[CHB][hapmap]
rs1032895	1.00[CHB][hapmap]
rs13119161	0.82[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs13151711	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1505678	1.00[CHB][hapmap]
rs1505679	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1809992	1.00[CHB][hapmap]
rs2342454	1.00[CHB][hapmap]
rs2342716	1.00[CHB][hapmap]
rs4241638	1.00[CHB][hapmap]
rs4580682	1.00[CHB][hapmap]
rs4860410	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62314360	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62314361	1.00[AFR][1000 genomes]
rs62314365	0.94[EUR][1000 genomes]
rs6551621	1.00[CHB][hapmap]
rs6551623	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7655251	1.00[CHB][hapmap]
rs7659954	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7696470	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv461376	chr4:62187646-62274626	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv594327	chr4:62187646-62274626	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62198800-62207400	Weak transcription	Fetal Lung	lung
2	chr4:62200200-62203400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:62200600-62203400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:62201000-62203600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:62201000-62203600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr4:62201000-62204000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr4:62201200-62203200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr4:62201800-62203200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr4:62201800-62203600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr4:62202000-62203200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:62202000-62203200	Enhancers	H9 Cell Line	embryonic stem cell
12	chr4:62202000-62203200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr4:62202000-62203200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr4:62202000-62203200	Enhancers	Brain Germinal Matrix	brain
15	chr4:62202000-62203400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr4:62202000-62203400	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr4:62202200-62203000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr4:62202200-62203200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr4:62202200-62203200	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr4:62202200-62203200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr4:62202400-62203400	Weak transcription	Fetal Brain Male	brain
22	chr4:62202400-62203800	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr4:62202600-62203000	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr4:62202600-62203200	Enhancers	Brain Cingulate Gyrus	brain
25	chr4:62202600-62203200	Enhancers	Brain Substantia Nigra	brain
26	chr4:62202600-62203400	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr4:62202600-62203400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr4:62202600-62203400	Enhancers	Brain Angular Gyrus	brain
29	chr4:62202600-62203400	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr4:62202600-62203800	Enhancers	H1 Cell Line	embryonic stem cell
31	chr4:62202600-62203800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr4:62202800-62203000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr4:62202800-62203200	Enhancers	Brain Anterior Caudate	brain
34	chr4:62202800-62203200	Enhancers	Brain Hippocampus Middle	brain

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