Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10001314	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10027782	1.00[CHB][hapmap]
rs10030989	1.00[CHB][hapmap]
rs1021925	1.00[CHB][hapmap]
rs1021926	1.00[CHB][hapmap]
rs1032895	1.00[CHB][hapmap];0.90[YRI][hapmap];0.81[AMR][1000 genomes]
rs11723669	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13119161	0.86[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs13151711	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1505678	1.00[CHB][hapmap]
rs1505679	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1809992	1.00[CHB][hapmap]
rs2342454	1.00[CHB][hapmap]
rs2342716	1.00[CHB][hapmap]
rs4241638	1.00[CHB][hapmap]
rs4580682	1.00[CHB][hapmap]
rs4860410	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62314360	0.84[ASN][1000 genomes]
rs62314365	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6551621	1.00[CHB][hapmap];0.82[YRI][hapmap]
rs7655251	1.00[CHB][hapmap]
rs7659954	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7696470	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv461376	chr4:62187646-62274626	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv594327	chr4:62187646-62274626	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62186600-62202800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:62194000-62202000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:62198800-62207400	Weak transcription	Fetal Lung	lung
4	chr4:62199800-62201800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr4:62200200-62203400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:62200600-62202000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr4:62200600-62202000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr4:62200600-62202200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:62200600-62203400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:62200800-62201400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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