Variant report

Variant	rs10001314
Chromosome Location	chr4:62208757-62208758
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11723669	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13119161	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs13151711	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1505679	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4860410	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62314360	0.84[ASN][1000 genomes]
rs62314365	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6551623	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7659954	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv461376	chr4:62187646-62274626	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv594327	chr4:62187646-62274626	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62203200-62209000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr4:62203400-62210000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:62203600-62209600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:62203600-62209600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr4:62203600-62209600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:62203600-62211800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:62204200-62209000	Weak transcription	Fetal Brain Male	brain
8	chr4:62206000-62209800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr4:62208000-62210200	Enhancers	Fetal Lung	lung
10	chr4:62208200-62209200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr4:62208200-62209200	Enhancers	Fetal Stomach	stomach
12	chr4:62208200-62210400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:62208400-62210000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr4:62208600-62209000	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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