Variant report

Variant	rs7655251
Chromosome Location	chr4:62164413-62164414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10027782	0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10030989	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1021925	0.84[CEU][hapmap];1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1021926	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1032895	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1159029	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11723669	1.00[CHB][hapmap]
rs13151711	1.00[CHB][hapmap]
rs1505678	0.95[CEU][hapmap];1.00[CHB][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1505679	1.00[CHB][hapmap]
rs17466134	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1809992	0.81[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.95[LWK][hapmap];0.96[MKK][hapmap];0.90[TSI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2135241	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2135242	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2342454	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2342716	0.81[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];0.91[LWK][hapmap];0.93[MKK][hapmap];0.87[TSI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4241638	0.83[CEU][hapmap];1.00[CHB][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4580682	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4860410	1.00[CHB][hapmap]
rs6551621	0.84[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6551623	1.00[CHB][hapmap]
rs7676888	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7696470	0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879075	chr4:62124531-62354791	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62151400-62164800	Weak transcription	Brain Anterior Caudate	brain
2	chr4:62158600-62169600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr4:62159000-62164800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:62159000-62167200	Weak transcription	Brain Substantia Nigra	brain
5	chr4:62159000-62169600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:62159000-62174000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:62160200-62168000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr4:62160600-62169000	Weak transcription	Brain Angular Gyrus	brain
9	chr4:62160800-62167000	Weak transcription	Fetal Lung	lung
10	chr4:62162000-62167000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr4:62162200-62169000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr4:62162200-62171400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr4:62163000-62165200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr4:62163400-62164800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr4:62163400-62165400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr4:62163600-62164800	Weak transcription	Fetal Brain Male	brain
17	chr4:62164000-62164800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr4:62164000-62165400	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr4:62164200-62165200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:62164200-62165400	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr4:62164200-62171200	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr4:62164400-62164600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell

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