Variant report

Variant	rs7679715
Chromosome Location	chr4:46888116-46888117
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10017677	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs10021918	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs10025240	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs10025379	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs10027692	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs10028342	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs10033500	0.83[CEU][hapmap]
rs10050095	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs10517169	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs1160093	1.00[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];0.81[MEX][hapmap];0.96[ASN][1000 genomes]
rs12508654	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap];0.96[ASN][1000 genomes]
rs13110516	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs13112436	0.87[CEU][hapmap]
rs13114476	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs13115057	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs13126445	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs13138566	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs13140528	0.80[CHB][hapmap]
rs1398170	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs1512126	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs1512136	0.88[CEU][hapmap]
rs1512138	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs17598809	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs17599074	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs17641065	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs17641171	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs1849280	0.86[CEU][hapmap]
rs2351170	0.87[CEU][hapmap]
rs6447517	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[YRI][hapmap];0.96[ASN][1000 genomes]
rs6818817	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs6819625	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs6842375	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs6847258	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs7678338	0.88[CEU][hapmap]
rs7683996	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs7691100	0.91[CEU][hapmap];0.81[CHB][hapmap]
rs9291292	0.88[CEU][hapmap];0.80[CHB][hapmap]
rs9291294	0.86[CHB][hapmap]
rs9291295	0.87[CEU][hapmap]
rs9291296	0.87[CEU][hapmap]
rs9291297	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs953380	0.88[CEU][hapmap];0.81[CHB][hapmap]
rs9992220	0.87[CEU][hapmap];0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879000	chr4:46635167-46890046	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879001	chr4:46823634-46893766	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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