Variant report

Variant	rs7691370
Chromosome Location	chr4:33846831-33846832
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10011550	0.83[ASN][1000 genomes]
rs10033782	0.81[ASN][1000 genomes]
rs10050065	0.83[ASN][1000 genomes]
rs12640941	0.83[ASN][1000 genomes]
rs13111438	0.83[ASN][1000 genomes]
rs13112341	0.82[ASN][1000 genomes]
rs13113238	0.82[ASN][1000 genomes]
rs13117838	0.80[ASN][1000 genomes]
rs1373494	0.83[ASN][1000 genomes]
rs16995875	0.87[ASN][1000 genomes]
rs2120677	0.81[ASN][1000 genomes]
rs2166108	0.81[ASN][1000 genomes]
rs2166110	0.84[ASN][1000 genomes]
rs2338361	0.83[ASN][1000 genomes]
rs28394002	0.81[ASN][1000 genomes]
rs28696054	0.81[ASN][1000 genomes]
rs28744428	0.81[ASN][1000 genomes]
rs28819970	0.83[ASN][1000 genomes]
rs35107776	0.81[ASN][1000 genomes]
rs35639548	0.81[ASN][1000 genomes]
rs36051778	0.89[ASN][1000 genomes]
rs3863828	0.81[ASN][1000 genomes]
rs3910837	0.81[ASN][1000 genomes]
rs4444815	0.83[ASN][1000 genomes]
rs59660596	0.81[ASN][1000 genomes]
rs6810417	0.83[ASN][1000 genomes]
rs6858079	0.83[ASN][1000 genomes]
rs7665615	0.81[ASN][1000 genomes]
rs7674046	0.83[ASN][1000 genomes]
rs7684329	0.81[ASN][1000 genomes]
rs7693464	0.83[ASN][1000 genomes]
rs7694226	0.83[ASN][1000 genomes]
rs9997046	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005061	chr4:33366334-33894491	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv878876	chr4:33653757-34000455	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv878877	chr4:33827241-33883366	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv980190	chr4:33828532-33862137	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	esv1844908	chr4:33831865-33863879	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
6	esv1816217	chr4:33833785-33863879	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
7	esv1821244	chr4:33833785-33995979	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv822522	chr4:33834390-33848949	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	esv1849479	chr4:33840835-33863879	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
10	esv3468327	chr4:33846115-33848573	ZNF genes & repeats Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
11	esv3468328	chr4:33846115-33848573	ZNF genes & repeats Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:33846200-33848400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr4:33846800-33847200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
3	chr4:33846800-33847200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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