Variant report

Variant	rs16995875
Chromosome Location	chr4:33835619-33835620
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10011550	0.91[ASN][1000 genomes]
rs10021740	0.82[ASN][1000 genomes]
rs10025016	0.82[ASN][1000 genomes]
rs10030710	0.82[ASN][1000 genomes]
rs10033461	0.82[ASN][1000 genomes]
rs10033782	0.88[ASN][1000 genomes]
rs10034901	0.82[ASN][1000 genomes]
rs10050065	0.91[ASN][1000 genomes]
rs10470879	0.82[ASN][1000 genomes]
rs11945628	0.82[ASN][1000 genomes]
rs12640941	0.91[ASN][1000 genomes]
rs12642628	0.83[ASN][1000 genomes]
rs13110392	0.82[ASN][1000 genomes]
rs13111438	0.91[ASN][1000 genomes]
rs13112341	0.90[ASN][1000 genomes]
rs13113238	0.90[ASN][1000 genomes]
rs13117838	0.85[ASN][1000 genomes]
rs13131261	0.82[ASN][1000 genomes]
rs13136846	0.82[ASN][1000 genomes]
rs13137090	0.82[ASN][1000 genomes]
rs13139622	0.82[ASN][1000 genomes]
rs13142161	0.82[ASN][1000 genomes]
rs13142365	0.82[ASN][1000 genomes]
rs13147878	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13150067	0.82[ASN][1000 genomes]
rs1373494	0.91[ASN][1000 genomes]
rs1378039	0.82[ASN][1000 genomes]
rs1444377	0.82[ASN][1000 genomes]
rs1444378	0.82[ASN][1000 genomes]
rs1596581	0.82[ASN][1000 genomes]
rs16989167	0.81[ASN][1000 genomes]
rs16989187	0.82[ASN][1000 genomes]
rs16989190	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2120677	0.88[ASN][1000 genomes]
rs2166108	0.88[ASN][1000 genomes]
rs2166109	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2166110	0.91[ASN][1000 genomes]
rs2338361	0.91[ASN][1000 genomes]
rs28394002	0.88[ASN][1000 genomes]
rs28489645	0.83[ASN][1000 genomes]
rs28558465	0.82[ASN][1000 genomes]
rs28588941	0.82[ASN][1000 genomes]
rs28613726	0.82[ASN][1000 genomes]
rs28661791	0.82[ASN][1000 genomes]
rs28696054	0.88[ASN][1000 genomes]
rs28744428	0.89[ASN][1000 genomes]
rs28814696	0.82[ASN][1000 genomes]
rs28819970	0.91[ASN][1000 genomes]
rs28830587	0.82[ASN][1000 genomes]
rs28848573	0.82[ASN][1000 genomes]
rs28855206	0.82[ASN][1000 genomes]
rs28859331	0.82[ASN][1000 genomes]
rs28872587	0.82[ASN][1000 genomes]
rs28877976	0.82[ASN][1000 genomes]
rs28880369	0.82[ASN][1000 genomes]
rs28884892	0.81[ASN][1000 genomes]
rs28893243	0.82[ASN][1000 genomes]
rs34003616	0.81[ASN][1000 genomes]
rs34151233	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34365744	0.82[ASN][1000 genomes]
rs35107776	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35437107	0.81[ASN][1000 genomes]
rs35639548	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35664299	0.82[ASN][1000 genomes]
rs36051778	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3863828	0.88[ASN][1000 genomes]
rs3910837	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4444815	0.91[ASN][1000 genomes]
rs4475134	0.82[ASN][1000 genomes]
rs57420599	0.81[ASN][1000 genomes]
rs59660596	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67441316	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67906834	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6810417	0.91[ASN][1000 genomes]
rs6858079	0.91[ASN][1000 genomes]
rs71602006	0.82[ASN][1000 genomes]
rs73127077	0.82[ASN][1000 genomes]
rs7660710	0.81[ASN][1000 genomes]
rs7661640	0.82[ASN][1000 genomes]
rs7665615	0.88[ASN][1000 genomes]
rs7667563	0.82[ASN][1000 genomes]
rs7674046	0.91[ASN][1000 genomes]
rs7684329	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7688152	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7691370	0.87[ASN][1000 genomes]
rs7693464	0.91[ASN][1000 genomes]
rs7694031	0.82[ASN][1000 genomes]
rs7694226	0.91[ASN][1000 genomes]
rs9990714	0.81[ASN][1000 genomes]
rs9992483	0.82[ASN][1000 genomes]
rs9993419	0.82[ASN][1000 genomes]
rs9995588	0.82[ASN][1000 genomes]
rs9995797	0.82[ASN][1000 genomes]
rs9997046	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005061	chr4:33366334-33894491	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv878876	chr4:33653757-34000455	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv878877	chr4:33827241-33883366	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv980190	chr4:33828532-33862137	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	esv1844908	chr4:33831865-33863879	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
6	esv1816217	chr4:33833785-33863879	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
7	esv1821244	chr4:33833785-33995979	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv822522	chr4:33834390-33848949	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:33829600-33842400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:33833000-33839200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:33833600-33839200	Weak transcription	HSMMtube	muscle
4	chr4:33834000-33837000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr4:33834000-33837800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:33834000-33837800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:33834200-33837400	Weak transcription	HSMM	muscle

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