Variant report
Variant | rs2166109 |
---|---|
Chromosome Location | chr4:33840198-33840199 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10011550 | 0.82[ASN][1000 genomes] |
rs10050065 | 0.82[ASN][1000 genomes] |
rs12640941 | 0.82[ASN][1000 genomes] |
rs13102670 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
rs13111438 | 0.82[ASN][1000 genomes] |
rs13112341 | 0.82[ASN][1000 genomes] |
rs13113238 | 0.82[ASN][1000 genomes] |
rs13147878 | 0.89[EUR][1000 genomes] |
rs1373494 | 0.82[ASN][1000 genomes] |
rs16989190 | 0.89[EUR][1000 genomes] |
rs16995875 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs2120677 | 0.80[ASN][1000 genomes] |
rs2166108 | 0.80[ASN][1000 genomes] |
rs2166110 | 0.83[ASN][1000 genomes] |
rs2338361 | 0.82[ASN][1000 genomes] |
rs28394002 | 0.80[ASN][1000 genomes] |
rs28696054 | 0.80[ASN][1000 genomes] |
rs28744428 | 0.81[ASN][1000 genomes] |
rs28819970 | 0.82[ASN][1000 genomes] |
rs34151233 | 0.88[EUR][1000 genomes] |
rs35107776 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs35639548 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs36051778 | 0.80[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs3863828 | 0.80[ASN][1000 genomes] |
rs3910837 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs4444815 | 0.82[ASN][1000 genomes] |
rs59660596 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs67441316 | 0.88[EUR][1000 genomes] |
rs67906834 | 0.89[EUR][1000 genomes] |
rs6810417 | 0.82[ASN][1000 genomes] |
rs6821209 | 0.90[CEU][hapmap];0.84[JPT][hapmap] |
rs6858079 | 0.82[ASN][1000 genomes] |
rs7665615 | 0.80[ASN][1000 genomes] |
rs7674046 | 0.82[ASN][1000 genomes] |
rs7684329 | 0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs7688152 | 0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs7693464 | 0.82[ASN][1000 genomes] |
rs7694226 | 0.82[ASN][1000 genomes] |
rs9997046 | 0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1005061 | chr4:33366334-33894491 | Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
2 | nsv878876 | chr4:33653757-34000455 | Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
3 | nsv878877 | chr4:33827241-33883366 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
4 | nsv980190 | chr4:33828532-33862137 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
5 | esv1844908 | chr4:33831865-33863879 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
6 | esv1816217 | chr4:33833785-33863879 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
7 | esv1821244 | chr4:33833785-33995979 | Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
8 | nsv822522 | chr4:33834390-33848949 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:33829600-33842400 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |