Variant report
Variant | rs34151233 |
---|---|
Chromosome Location | chr4:33708824-33708825 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10011550 | 0.88[ASN][1000 genomes] |
rs10021740 | 1.00[ASN][1000 genomes] |
rs10025016 | 1.00[ASN][1000 genomes] |
rs10030710 | 1.00[ASN][1000 genomes] |
rs10033461 | 1.00[ASN][1000 genomes] |
rs10033782 | 0.86[ASN][1000 genomes] |
rs10034901 | 1.00[ASN][1000 genomes] |
rs10050065 | 0.88[ASN][1000 genomes] |
rs10470879 | 1.00[ASN][1000 genomes] |
rs11945628 | 1.00[ASN][1000 genomes] |
rs12640941 | 0.88[ASN][1000 genomes] |
rs12641122 | 0.83[ASN][1000 genomes] |
rs12642628 | 0.99[ASN][1000 genomes] |
rs13110392 | 1.00[ASN][1000 genomes] |
rs13111438 | 0.88[ASN][1000 genomes] |
rs13112341 | 0.87[ASN][1000 genomes] |
rs13113238 | 0.87[ASN][1000 genomes] |
rs13131261 | 1.00[ASN][1000 genomes] |
rs13136846 | 1.00[ASN][1000 genomes] |
rs13137090 | 1.00[ASN][1000 genomes] |
rs13139622 | 1.00[ASN][1000 genomes] |
rs13142161 | 1.00[ASN][1000 genomes] |
rs13142365 | 1.00[ASN][1000 genomes] |
rs13147878 | 0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13150067 | 1.00[ASN][1000 genomes] |
rs1373494 | 0.88[ASN][1000 genomes] |
rs1378039 | 1.00[ASN][1000 genomes] |
rs1444377 | 1.00[ASN][1000 genomes] |
rs1444378 | 1.00[ASN][1000 genomes] |
rs1596581 | 1.00[ASN][1000 genomes] |
rs16989167 | 0.99[ASN][1000 genomes] |
rs16989187 | 1.00[ASN][1000 genomes] |
rs16989190 | 0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs16995875 | 0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs2120677 | 0.90[ASN][1000 genomes] |
rs2166108 | 0.90[ASN][1000 genomes] |
rs2166109 | 0.88[EUR][1000 genomes] |
rs2166110 | 0.87[ASN][1000 genomes] |
rs2338361 | 0.88[ASN][1000 genomes] |
rs28394002 | 0.90[ASN][1000 genomes] |
rs28489645 | 0.98[ASN][1000 genomes] |
rs28558465 | 1.00[ASN][1000 genomes] |
rs28588941 | 1.00[ASN][1000 genomes] |
rs28613726 | 1.00[ASN][1000 genomes] |
rs28661791 | 1.00[ASN][1000 genomes] |
rs28696054 | 0.90[ASN][1000 genomes] |
rs28744428 | 0.85[ASN][1000 genomes] |
rs28814696 | 1.00[ASN][1000 genomes] |
rs28819970 | 0.88[ASN][1000 genomes] |
rs28830587 | 1.00[ASN][1000 genomes] |
rs28848573 | 1.00[ASN][1000 genomes] |
rs28855206 | 1.00[ASN][1000 genomes] |
rs28859331 | 1.00[ASN][1000 genomes] |
rs28872587 | 1.00[ASN][1000 genomes] |
rs28877976 | 1.00[ASN][1000 genomes] |
rs28880369 | 1.00[ASN][1000 genomes] |
rs28884892 | 0.99[ASN][1000 genomes] |
rs28893243 | 0.99[ASN][1000 genomes] |
rs34003616 | 0.98[ASN][1000 genomes] |
rs34365744 | 1.00[ASN][1000 genomes] |
rs35107776 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs35437107 | 0.98[ASN][1000 genomes] |
rs35639548 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs35664299 | 1.00[ASN][1000 genomes] |
rs36051778 | 0.81[ASN][1000 genomes] |
rs3863828 | 0.86[ASN][1000 genomes] |
rs3910837 | 0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs4444815 | 0.88[ASN][1000 genomes] |
rs4475134 | 1.00[ASN][1000 genomes] |
rs57420599 | 0.98[ASN][1000 genomes] |
rs59660596 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs67441316 | 0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs67906834 | 0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6810417 | 0.88[ASN][1000 genomes] |
rs6858079 | 0.88[ASN][1000 genomes] |
rs71602006 | 1.00[ASN][1000 genomes] |
rs73127077 | 1.00[ASN][1000 genomes] |
rs7660710 | 0.98[ASN][1000 genomes] |
rs7661640 | 1.00[ASN][1000 genomes] |
rs7665615 | 0.90[ASN][1000 genomes] |
rs7667563 | 1.00[ASN][1000 genomes] |
rs7674046 | 0.88[ASN][1000 genomes] |
rs7684329 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs7688152 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs7693464 | 0.88[ASN][1000 genomes] |
rs7694031 | 1.00[ASN][1000 genomes] |
rs7694226 | 0.88[ASN][1000 genomes] |
rs9990714 | 0.97[ASN][1000 genomes] |
rs9992483 | 1.00[ASN][1000 genomes] |
rs9993419 | 1.00[ASN][1000 genomes] |
rs9995588 | 1.00[ASN][1000 genomes] |
rs9995797 | 1.00[ASN][1000 genomes] |
rs9997046 | 0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1012155 | chr4:33203447-33798612 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
2 | nsv537059 | chr4:33203447-33798612 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
3 | nsv1005061 | chr4:33366334-33894491 | Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
4 | nsv878876 | chr4:33653757-34000455 | Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
5 | esv1819154 | chr4:33658459-33774322 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
6 | esv3467062 | chr4:33706549-33714132 | Enhancers ZNF genes & repeats Weak transcription | n/a | n/a | inside rSNPs | diseases |
7 | esv3467065 | chr4:33706549-33714132 | Enhancers ZNF genes & repeats Weak transcription | n/a | n/a | inside rSNPs | diseases |
8 | esv3467061 | chr4:33706575-33714131 | ZNF genes & repeats Weak transcription Enhancers | n/a | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:33706200-33711400 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |