Variant report

Variant	rs13102670
Chromosome Location	chr4:33850102-33850103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10011550	0.85[ASN][1000 genomes]
rs10033782	0.83[ASN][1000 genomes]
rs10050065	0.85[ASN][1000 genomes]
rs12640941	0.85[ASN][1000 genomes]
rs13106126	0.85[CEU][hapmap]
rs13106616	0.90[CEU][hapmap]
rs13111438	0.85[ASN][1000 genomes]
rs13112341	0.84[ASN][1000 genomes]
rs13113238	0.84[ASN][1000 genomes]
rs13147878	0.86[EUR][1000 genomes]
rs1373494	0.85[ASN][1000 genomes]
rs16989190	0.86[EUR][1000 genomes]
rs16995875	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2120677	0.83[ASN][1000 genomes]
rs2166108	0.83[ASN][1000 genomes]
rs2166109	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2166110	0.86[ASN][1000 genomes]
rs2338361	0.85[ASN][1000 genomes]
rs28394002	0.83[ASN][1000 genomes]
rs28696054	0.83[ASN][1000 genomes]
rs28744428	0.84[ASN][1000 genomes]
rs28819970	0.85[ASN][1000 genomes]
rs34151233	0.85[EUR][1000 genomes]
rs35107776	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35639548	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36051778	0.93[ASN][1000 genomes]
rs3863828	0.83[ASN][1000 genomes]
rs3910837	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4444815	0.85[ASN][1000 genomes]
rs59660596	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67441316	0.85[EUR][1000 genomes]
rs67906834	0.86[EUR][1000 genomes]
rs6810417	0.85[ASN][1000 genomes]
rs6821209	0.90[CEU][hapmap];0.81[JPT][hapmap]
rs6858079	0.85[ASN][1000 genomes]
rs7441223	0.90[CEU][hapmap];0.81[JPT][hapmap]
rs7665615	0.83[ASN][1000 genomes]
rs7674046	0.85[ASN][1000 genomes]
rs7684329	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7688152	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7691370	0.82[ASN][1000 genomes]
rs7693464	0.85[ASN][1000 genomes]
rs7694226	0.85[ASN][1000 genomes]
rs9997046	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005061	chr4:33366334-33894491	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv878876	chr4:33653757-34000455	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv878877	chr4:33827241-33883366	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv980190	chr4:33828532-33862137	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	esv1844908	chr4:33831865-33863879	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
6	esv1816217	chr4:33833785-33863879	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
7	esv1821244	chr4:33833785-33995979	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv1849479	chr4:33840835-33863879	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
9	esv3528817	chr4:33848338-33853089	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
10	esv3528820	chr4:33848607-33854505	Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
11	esv3467068	chr4:33849389-33852753	Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
12	esv3467069	chr4:33849389-33852753	Flanking Active TSS Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
13	esv3528816	chr4:33849593-33852719	Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
14	esv3528815	chr4:33849628-33852689	Flanking Active TSS Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
15	esv3528819	chr4:33849680-33852644	Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
16	esv3528821	chr4:33849684-33852642	Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links