Variant report

Variant	rs7693527
Chromosome Location	chr4:172499056-172499057
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10009454	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11930771	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11933530	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11940312	0.87[ASN][1000 genomes]
rs17208421	0.87[ASN][1000 genomes]
rs2204737	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2204738	0.93[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs28771712	0.88[AFR][1000 genomes]
rs55798512	0.89[ASN][1000 genomes]
rs59189112	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6553578	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6553579	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72989010	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72989011	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72989015	0.87[ASN][1000 genomes]
rs72989052	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7654240	0.87[ASN][1000 genomes]
rs7661463	0.87[ASN][1000 genomes]
rs7698881	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034055	chr4:172405998-172500475	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
2	nsv1016311	chr4:172405998-172502210	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	nsv1026605	chr4:172405998-172506536	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv1022077	chr4:172460997-172609297	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv537356	chr4:172460997-172609297	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:172499000-172499200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:172499000-172499200	Enhancers	Pancreas	Pancrea
3	chr4:172499000-172499400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr4:172499000-172499600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:172499000-172499800	Enhancers	HMEC	breast
6	chr4:172499000-172500000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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