Variant report

Variant	rs7661463
Chromosome Location	chr4:172504546-172504547
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10020087	0.87[ASN][1000 genomes]
rs11932956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11937324	0.87[ASN][1000 genomes]
rs11940312	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17056919	0.80[EUR][1000 genomes]
rs17056925	0.80[EUR][1000 genomes]
rs17057196	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17057198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17210635	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17270004	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35188354	0.80[EUR][1000 genomes]
rs59189112	0.87[ASN][1000 genomes]
rs6843923	0.87[ASN][1000 genomes]
rs72989011	0.87[ASN][1000 genomes]
rs72989015	1.00[ASN][1000 genomes]
rs72989052	0.87[ASN][1000 genomes]
rs7654240	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7693527	0.87[ASN][1000 genomes]
rs7698881	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026605	chr4:172405998-172506536	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
2	nsv1022077	chr4:172460997-172609297	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv537356	chr4:172460997-172609297	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:172503400-172505400	Enhancers	Primary B cells from peripheral blood	blood
2	chr4:172504400-172505000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:172504400-172506000	ZNF genes & repeats	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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