Variant report

Variant	rs10020087
Chromosome Location	chr4:172509887-172509888
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10009454	0.89[ASN][1000 genomes]
rs10028152	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11933530	1.00[CHD][hapmap]
rs11937324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11940312	0.87[ASN][1000 genomes]
rs2204737	0.89[ASN][1000 genomes]
rs2204738	0.89[ASN][1000 genomes]
rs55798512	0.89[ASN][1000 genomes]
rs6553578	0.89[ASN][1000 genomes]
rs6553579	0.89[ASN][1000 genomes]
rs6843923	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72989015	0.87[ASN][1000 genomes]
rs7654240	0.87[ASN][1000 genomes]
rs7661463	0.87[ASN][1000 genomes]
rs7698881	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9991140	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9991304	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9991308	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022077	chr4:172460997-172609297	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv537356	chr4:172460997-172609297	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:172507600-172511800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr4:172509000-172510800	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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