Variant report

Variant	rs6843923
Chromosome Location	chr4:172504877-172504878
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10009454	0.89[ASN][1000 genomes]
rs10020087	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10028152	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11937324	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11940312	0.87[ASN][1000 genomes]
rs2204737	0.89[ASN][1000 genomes]
rs2204738	0.89[ASN][1000 genomes]
rs55798512	0.89[ASN][1000 genomes]
rs6553578	0.89[ASN][1000 genomes]
rs6553579	0.89[ASN][1000 genomes]
rs72989015	0.87[ASN][1000 genomes]
rs7654240	0.87[ASN][1000 genomes]
rs7661463	0.87[ASN][1000 genomes]
rs7698881	0.87[ASN][1000 genomes]
rs9991140	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9991304	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9991308	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026605	chr4:172405998-172506536	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
2	nsv1022077	chr4:172460997-172609297	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv537356	chr4:172460997-172609297	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:172503400-172505400	Enhancers	Primary B cells from peripheral blood	blood
2	chr4:172504400-172505000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:172504400-172506000	ZNF genes & repeats	GM12878-XiMat	blood
4	chr4:172504600-172505200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:172504600-172505800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links